Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g0986 ATGTCATCCTCTTCTTCTTCTACTACTACATCAAATAACACTCAGCAACACCAACTGGACCAGCATCTCCCCTCAGCTGAGCAGCTTTGTTATGTTCAGTGCAACATTTGCGACACTGTCCTTGCGGTGAGTGTTCCTTGCAGTAGCTTGTTCAAAACTGTAACAGTGAGATGTGGGCACTGCACCAATCTGCTGCCTGTGAACATGTGTGGTCTGCTTTTGCCTTCTCCTAATCAGTTTCATCAGCTTGGCCACTCTAATTTCTTTTCTCCTAATTCCCATAACATTTTGGAAAATATCCCAACCCCAAATTCCAATTATCTCCACAACCAGTTTGCAGCTAATTCTAACAATTTTGAAAATTTTGGAATTATGCCATCTCGAGGGGTTAATGATGAGCTGATTCCTAAGCCTCCAGTCATCAATCGACCTCCAGAGAAGAGACAGAGAGTGCCCTCTGCGTACAACCGCTTCATCAAGGACGAGATCCAACGCATTAAATCTGTGAATCCCGATATATCCCATAGAGAAGCCTTCAGTGCAGCTGCTAAGAATTGGGCTCACTTTCCACATATTCACTTTGGTCTCATGCCCGACCAGACCGTGAAGAAGACAAATATCCGTCAACAGGAAGGAGATCAGAATGTTCTGATGAAAGACAATGGATTCTATGCCTCAGCTAATGTTGGTGTCTCCCATTTCTAA 705 43.97 MSSSSSSTTTSNNTQQHQLDQHLPSAEQLCYVQCNICDTVLAVSVPCSSLFKTVTVRCGHCTNLLPVNMCGLLLPSPNQFHQLGHSNFFSPNSHNILENIPTPNSNYLHNQFAANSNNFENFGIMPSRGVNDELIPKPPVINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDISHREAFSAAAKNWAHFPHIHFGLMPDQTVKKTNIRQQEGDQNVLMKDNGFYASANVGVSHF 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8360224 8362749 - Sed0008223.1 Sed05g0986 713612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g0986 234 PANTHER PROTEIN YABBY 6-RELATED 26 205 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0009944(PANTHER)|GO:0010154(PANTHER)|GO:0010158(PANTHER)|GO:0045165(PANTHER)|GO:1902183(PANTHER)|GO:2000024(PANTHER)
Sed05g0986 234 Pfam YABBY protein 26 196 IPR006780 GO:0007275(InterPro)
Sed05g0986 234 FunFam Axial regulator YABBY 141 212 - -
Sed05g0986 234 Gene3D High mobility group box domain 141 212 IPR036910 -
Sed05g0986 234 CDD HMG-box_SF 150 186 - -
Sed05g0986 234 SUPERFAMILY HMG-box 139 189 IPR036910 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g4022 Sed-Chr1:69254375 Sed05g0986 Sed-Chr5:8360224 1.10E-74 dispersed
Sed03g2674 Sed-Chr3:42997721 Sed05g0986 Sed-Chr5:8360224 7.90E-22 dispersed
Sed04g0622 Sed-Chr4:4824311 Sed05g0986 Sed-Chr5:8360224 1.50E-31 dispersed
Sed05g0986 Sed-Chr5:8360224 Sed10g1447 Sed-Chr10:30726743 1.80E-41 dispersed
Sed03g1256 Sed-Chr3:8067850 Sed05g0986 Sed-Chr5:8360224 8.50E-65 transposed
Sed01g4021 Sed-Chr1:69254375 Sed05g0986 Sed-Chr5:8360224 1.30E-102 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38495 PF04690 YABBY 4.40E-70 CL0114 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g0986 K25796 - csv:101214748 383.645