Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed05g1007 | ATGGGGTTTGTACATTCAGGGGAATTATGTAGCAGAGCATTGAACACAGAGCCGGAAGTTGCATTTCTGGAGCCAATTCGCCGCCACTTGTTGGGCGACTCGGAGGCTGCCGTCGCCGGCGTTTTCAGCCGGAGTGGTAATTTCAATACCTCAATCCCATGTATCGACGACAATTGGGGAGATTTGCCTCTCAAAATGGACGACTCTGAAGATATGCTCATCGCCGCCGTTCTCCGGGATGCTGTCACCGCCGGCTGGGTTCCGTCGGATCCGGAGGTGTCGCCGGTGAGCTTTTCGCCGGCGGTGGTACAGCAAAAGGGGAGGCATTACAGAGGAGTGCGGCGGCGGCCGTGGGGGAAGTTCGCGGCGGAGATTCGGGATCCGGCGAAAAATGGTGCCAGAGTTTGGCTTGGGACATATGAGACGGCGGAGGATGCAGCTCTAGCTTACGACACGGCGGCCTACCGGATGCGAGGATCGAGGGCTCTGCTCAATTTTCCCCTTCGAATCAACTCCGGCGAGCCCGAACCGGTTCGAGTCACGTCGAAACGATCGTCGTCGGAGCTTTCTTCATCACCGAAGCGGCGGAAGAAGGTCAGCTCCGCCGTGGAAGGTGGGGGAGTACAAGTGGCAAACTTTACACATGGAAGGCAGGTGTTTACCAGCAATGCTAGCATTTAG | 681 | 57.12 | MGFVHSGELCSRALNTEPEVAFLEPIRRHLLGDSEAAVAGVFSRSGNFNTSIPCIDDNWGDLPLKMDDSEDMLIAAVLRDAVTAGWVPSDPEVSPVSFSPAVVQQKGRHYRGVRRRPWGKFAAEIRDPAKNGARVWLGTYETAEDAALAYDTAAYRMRGSRALLNFPLRINSGEPEPVRVTSKRSSSELSSSPKRRKKVSSAVEGGGVQVANFTHGRQVFTSNASI | 226 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 8711649 | 8712342 | + | Sed0003306.1 | Sed05g1007 | 713633 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed05g1007 | 226 | Pfam | AP2 domain | 109 | 160 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed05g1007 | 226 | MobiDBLite | consensus disorder prediction | 174 | 204 | - | - | |
Sed05g1007 | 226 | CDD | AP2 | 109 | 167 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed05g1007 | 226 | SMART | rav1_2 | 109 | 173 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed05g1007 | 226 | PANTHER | DNA-BINDING DOMAIN | 99 | 196 | IPR044808 | GO:0003700(InterPro)|GO:0009873(InterPro) | |
Sed05g1007 | 226 | SUPERFAMILY | DNA-binding domain | 109 | 169 | IPR016177 | GO:0003677(InterPro) | |
Sed05g1007 | 226 | ProSiteProfiles | AP2/ERF domain profile. | 109 | 167 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed05g1007 | 226 | Gene3D | AP2/ERF domain | 108 | 170 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed05g1007 | 226 | PRINTS | Ethylene responsive element binding protein signature | 110 | 121 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed05g1007 | 226 | PRINTS | Ethylene responsive element binding protein signature | 133 | 149 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed05g1007 | 226 | FunFam | Ethylene-responsive transcription factor 2 | 108 | 168 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g1680 | Sed-Chr4:31475757 | Sed05g1007 | Sed-Chr5:8711649 | 3.20E-61 | dispersed | |
Sed05g1007 | Sed-Chr5:8711649 | Sed13g0266 | Sed-Chr13:1779156 | 6.60E-36 | dispersed | |
Sed01g4041 | Sed-Chr1:69432874 | Sed05g1007 | Sed-Chr5:8711649 | 1.10E-78 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
38496 | PF00847 | AP2 | 4.20E-14 | CL0081 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed05g1007 | K09286 | - | csv:101221583 | 281.182 |