Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1007 ATGGGGTTTGTACATTCAGGGGAATTATGTAGCAGAGCATTGAACACAGAGCCGGAAGTTGCATTTCTGGAGCCAATTCGCCGCCACTTGTTGGGCGACTCGGAGGCTGCCGTCGCCGGCGTTTTCAGCCGGAGTGGTAATTTCAATACCTCAATCCCATGTATCGACGACAATTGGGGAGATTTGCCTCTCAAAATGGACGACTCTGAAGATATGCTCATCGCCGCCGTTCTCCGGGATGCTGTCACCGCCGGCTGGGTTCCGTCGGATCCGGAGGTGTCGCCGGTGAGCTTTTCGCCGGCGGTGGTACAGCAAAAGGGGAGGCATTACAGAGGAGTGCGGCGGCGGCCGTGGGGGAAGTTCGCGGCGGAGATTCGGGATCCGGCGAAAAATGGTGCCAGAGTTTGGCTTGGGACATATGAGACGGCGGAGGATGCAGCTCTAGCTTACGACACGGCGGCCTACCGGATGCGAGGATCGAGGGCTCTGCTCAATTTTCCCCTTCGAATCAACTCCGGCGAGCCCGAACCGGTTCGAGTCACGTCGAAACGATCGTCGTCGGAGCTTTCTTCATCACCGAAGCGGCGGAAGAAGGTCAGCTCCGCCGTGGAAGGTGGGGGAGTACAAGTGGCAAACTTTACACATGGAAGGCAGGTGTTTACCAGCAATGCTAGCATTTAG 681 57.12 MGFVHSGELCSRALNTEPEVAFLEPIRRHLLGDSEAAVAGVFSRSGNFNTSIPCIDDNWGDLPLKMDDSEDMLIAAVLRDAVTAGWVPSDPEVSPVSFSPAVVQQKGRHYRGVRRRPWGKFAAEIRDPAKNGARVWLGTYETAEDAALAYDTAAYRMRGSRALLNFPLRINSGEPEPVRVTSKRSSSELSSSPKRRKKVSSAVEGGGVQVANFTHGRQVFTSNASI 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8711649 8712342 + Sed0003306.1 Sed05g1007 713633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1007 226 Pfam AP2 domain 109 160 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g1007 226 MobiDBLite consensus disorder prediction 174 204 - -
Sed05g1007 226 CDD AP2 109 167 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g1007 226 SMART rav1_2 109 173 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g1007 226 PANTHER DNA-BINDING DOMAIN 99 196 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Sed05g1007 226 SUPERFAMILY DNA-binding domain 109 169 IPR016177 GO:0003677(InterPro)
Sed05g1007 226 ProSiteProfiles AP2/ERF domain profile. 109 167 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g1007 226 Gene3D AP2/ERF domain 108 170 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g1007 226 PRINTS Ethylene responsive element binding protein signature 110 121 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g1007 226 PRINTS Ethylene responsive element binding protein signature 133 149 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g1007 226 FunFam Ethylene-responsive transcription factor 2 108 168 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1680 Sed-Chr4:31475757 Sed05g1007 Sed-Chr5:8711649 3.20E-61 dispersed
Sed05g1007 Sed-Chr5:8711649 Sed13g0266 Sed-Chr13:1779156 6.60E-36 dispersed
Sed01g4041 Sed-Chr1:69432874 Sed05g1007 Sed-Chr5:8711649 1.10E-78 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38496 PF00847 AP2 4.20E-14 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1007 K09286 - csv:101221583 281.182