Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1020 ATGGGAAAGCATGGACCTTGCTGTCACTGTGGAGTTGCAAGCACTCCTCTTTGGCGTAATGGGCCTCCAAATAAACCGGTATTATGCAACGCTTGCGGATCCCGATGGAGGACAAAGGGAACGCTTACAAACTATATCCCTTTCCACGCTCGGGCCGATCCTGATGATCATAAACATTACAGGGTTTCCAATGTGAAGAGTATTTCAATAAATTCAAACAAAGAAGTGAATCTGCTAAAAAGAAAGCTGCAACAAGCAAATGGATCGATTGACTGGATGGTTCCTGATCAAAGTCAGGGTTACTATAGAGTAGTGGATGAAGAAACGAGCAATAGATCGAGTTCCAGGTCGGTCATATCAAATCCTGAGAGCTGTGCCCATTTCATCCGTGCGGATGCAAGTGATTGGATAGGTCCAGCTCAGTCAATAGTGTTGGAGACCATGGTGCCTGCCAGGAAAAGGACCTGTGTGAATCATCCAAAGCAATCCCCAGTTGAAAAACTAACTAAAGATCTATACAATATTTTACATGAGCAGAGATCTTCCTATTTTTCGGAAGCTTTCGAGCACGATCTGCTTTTCGAGAGCGAAAAGCCTATGGTCTCTGTTGAGATAGGTCATGGAAGTATTCTCATTAGACATCCAAGCTCGATAGCTCGAGACGAAGAATTTGAACCTAGCTCGGCTTCAGTTGATAACAAGCAATACTTGGAAAGATGA 720 43.89 MGKHGPCCHCGVASTPLWRNGPPNKPVLCNACGSRWRTKGTLTNYIPFHARADPDDHKHYRVSNVKSISINSNKEVNLLKRKLQQANGSIDWMVPDQSQGYYRVVDEETSNRSSSRSVISNPESCAHFIRADASDWIGPAQSIVLETMVPARKRTCVNHPKQSPVEKLTKDLYNILHEQRSSYFSEAFEHDLLFESEKPMVSVEIGHGSILIRHPSSIARDEEFEPSSASVDNKQYLER 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8881636 8886345 + Sed0014832.1 Sed05g1020 713646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1020 239 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed05g1020 239 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 44 - -
Sed05g1020 239 PANTHER OSJNBB0038F03.10 PROTEIN 1 236 IPR044589 -
Sed05g1020 239 SMART GATA_3 1 55 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed05g1020 239 Gene3D - 4 86 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Sed05g1020 239 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed05g1020 239 CDD ZnF_GATA 6 41 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed05g1020 239 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1664 Sed-Chr4:31353844 Sed05g1020 Sed-Chr5:8881636 2.50E-86 dispersed
Sed04g1665 Sed-Chr4:31353844 Sed05g1020 Sed-Chr5:8881636 2.60E-50 dispersed
Sed05g1020 Sed-Chr5:8881636 Sed05g1021 Sed-Chr5:8881636 3.90E-140 tandem
Sed01g4052 Sed-Chr1:69496899 Sed05g1020 Sed-Chr5:8881636 8.90E-108 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38497 PF00320 GATA 3.40E-12 CL0167 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1020 - - - 0.0