Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1020 ATGGGAAAGCATGGACCTTGCTGTCACTGTGGAGTTGCAAGCACTCCTCTTTGGCGTAATGGGCCTCCAAATAAACCGGTATTATGCAACGCTTGCGGATCCCGATGGAGGACAAAGGGAACGCTTACAAACTATATCCCTTTCCACGCTCGGGCCGATCCTGATGATCATAAACATTACAGGGTTTCCAATGTGAAGAGTATTTCAATAAATTCAAACAAAGAAGTGAATCTGCTAAAAAGAAAGCTGCAACAAGCAAATGGATCGATTGACTGGATGGTTCCTGATCAAAGTCAGGGTTACTATAGAGTAGTGGATGAAGAAACGAGCAATAGATCGAGTTCCAGGTCGGTCATATCAAATCCTGAGAGCTGTGCCCATTTCATCCGTGCGGATGCAAGTGATTGGATAGGTCCAGCTCAGTCAATAGTGTTGGAGACCATGGTGCCTGCCAGGAAAAGGACCTGTGTGAATCATCCAAAGCAATCCCCAGTTGAAAAACTAACTAAAGATCTATACAATATTTTACATGAGCAGAGATCTTCCTATTTTTCGGAAGCTTTCGAGCACGATCTGCTTTTCGAGAGCGAAAAGCCTATGGTCTCTGTTGAGATAGGTCATGGAAGTATTCTCATTAGACATCCAAGCTCGATAGCTCGAGACGAAGAATTTGAACCTAGCTCGGCTTCAGTTGATAACAAGCAATACTTGGAAAGATGA 720 43.89 MGKHGPCCHCGVASTPLWRNGPPNKPVLCNACGSRWRTKGTLTNYIPFHARADPDDHKHYRVSNVKSISINSNKEVNLLKRKLQQANGSIDWMVPDQSQGYYRVVDEETSNRSSSRSVISNPESCAHFIRADASDWIGPAQSIVLETMVPARKRTCVNHPKQSPVEKLTKDLYNILHEQRSSYFSEAFEHDLLFESEKPMVSVEIGHGSILIRHPSSIARDEEFEPSSASVDNKQYLER 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8881636 8886345 + Sed0014832.1 Sed05g1020 713646

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1020 239 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed05g1020 239 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 44 - -
Sed05g1020 239 PANTHER OSJNBB0038F03.10 PROTEIN 1 236 IPR044589 -
Sed05g1020 239 SMART GATA_3 1 55 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed05g1020 239 Gene3D - 4 86 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Sed05g1020 239 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed05g1020 239 CDD ZnF_GATA 6 41 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed05g1020 239 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1020 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1664 Sed-Chr4:31353844 Sed05g1020 Sed-Chr5:8881636 2.50E-86 dispersed
Sed04g1665 Sed-Chr4:31353844 Sed05g1020 Sed-Chr5:8881636 2.60E-50 dispersed
Sed05g1020 Sed-Chr5:8881636 Sed05g1021 Sed-Chr5:8881636 3.90E-140 tandem
Sed01g4052 Sed-Chr1:69496899 Sed05g1020 Sed-Chr5:8881636 8.90E-108 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed03g1471 . 71 348 C2C2-Gata Transcription Factor Family AT5G25830 53.9 1.2e-67 254.6
Sed12g0790 . 3 149 C2C2-Gata Transcription Factor Family AT3G06740 58.4 6.7e-37 151.4
Sed06g2170 . 96 263 C2C2-Gata Transcription Factor Family AT2G45050 51.3 2.2e-43 173.7
Sed07g1682 . 103 275 C2C2-Gata Transcription Factor Family AT4G36240 50.3 3.0e-39 159.8
Sed04g1664 . 1 515 C2C2-Gata Transcription Factor Family AT4G17570 53.8 2.3e-137 486.9
Sed01g4052 . 1 513 C2C2-Gata Transcription Factor Family AT4G17570 52.0 1.4e-129 461.1
Sed05g1020 . 1 234 C2C2-Gata Transcription Factor Family AT4G17570 61.3 2.2e-71 267.7
Sed05g1021 . 1 234 C2C2-Gata Transcription Factor Family AT4G17570 61.3 2.2e-71 267.7
Sed05g1020 . 1 232 C2C2-Gata Transcription Factor Family AT5G47140 52.7 3.5e-55 213.8
Sed05g1021 . 1 232 C2C2-Gata Transcription Factor Family AT5G47140 52.7 3.5e-55 213.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001256 2 2 1 2 3 2 5 2 2 2 2 2 4 2 1 4 2 3 4 2 2 2 2 2 2 2 2 7 3 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38497 PF00320 GATA 3.40E-12 CL0167 Sed TF