Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed05g1021 | ATGGGAAAGCATGGACCTTGCTGTCACTGTGGAGTTGCAAGCACTCCTCTTTGGCGTAATGGGCCTCCAAATAAACCGGTATTATGCAACGCTTGCGGATCCCGATGGAGGACAAAGGGAACGCTTACAAACTATATCCCTTTCCACGCTCGGGCCGATCCTGATGATCATAAACATTACAGGGTTTCCAATGTGAAGAGTATTTCAATAAATTCAAACAAAGAAGTGAATCTGCTAAAAAGAAAGCTGCAACAAGCAAATGGATCGATTGACTGGATGGTTCCTGATCAAAGTCAGGGTTACTATAGAGTAGTGGATGAAGAAACGAGCAATAGATCGAGTTCCAGGTCGGTCATATCAAATCCTGAGAGCTGTGCCCATTTCATCCGTGCGGATGCAAGTGATTGGATAGGTCCAGCTCAGTCAATAGTGTTGGAGACCATGGTGCCTGCCAGGAAAAGGACCTGTGTGAATCATCCAAAGCAATCCCCAGTTGAAAAACTAACTAAAGATCTATACAATATTTTACATGAGCAGAGATCTTCCTATTTTTCGGAAGCTTTCGAGCACGATCTGCTTTTCGAGAGCGAAAAGCCTATGGTCTCTGTTGAGATAGGTCATGGAAGTATTCTCATTAGACATCCAAGCTCGATAGCTCGAGACGAAGAATTTGAACCTAGCTCGGCTTCAGTTGATAACAAGCAATACTTGGAAAGATGA | 720 | 43.89 | MGKHGPCCHCGVASTPLWRNGPPNKPVLCNACGSRWRTKGTLTNYIPFHARADPDDHKHYRVSNVKSISINSNKEVNLLKRKLQQANGSIDWMVPDQSQGYYRVVDEETSNRSSSRSVISNPESCAHFIRADASDWIGPAQSIVLETMVPARKRTCVNHPKQSPVEKLTKDLYNILHEQRSSYFSEAFEHDLLFESEKPMVSVEIGHGSILIRHPSSIARDEEFEPSSASVDNKQYLER | 239 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 8881636 | 8886345 | + | Sed0014832.2 | Sed05g1021 | 713647 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed05g1021 | 239 | ProSiteProfiles | GATA-type zinc finger domain profile. | 7 | 40 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed05g1021 | 239 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 4 | 44 | - | - | |
Sed05g1021 | 239 | PANTHER | OSJNBB0038F03.10 PROTEIN | 1 | 236 | IPR044589 | - | |
Sed05g1021 | 239 | SMART | GATA_3 | 1 | 55 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed05g1021 | 239 | Gene3D | - | 4 | 86 | IPR013088 | GO:0006355(InterPro)|GO:0008270(InterPro) | |
Sed05g1021 | 239 | Pfam | GATA zinc finger | 7 | 41 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed05g1021 | 239 | CDD | ZnF_GATA | 6 | 41 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed05g1021 | 239 | ProSitePatterns | GATA-type zinc finger domain. | 7 | 32 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed05g1020 | Sed-Chr5:8881636 | Sed05g1021 | Sed-Chr5:8881636 | 3.90E-140 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
38498 | PF00320 | GATA | 3.40E-12 | CL0167 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed05g1021 | - | - | - | 0.0 |