Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1022 ATGGCGACGAGTTTGGTTCGCTCTCACAGGCCCGAGTTTCTCACCATCGCCGCCGCCGTGGTTGCTGTCGGCGTCGCCGCTGCCTACTACTTCTGCGTCGCCAAGAAATCAAAACCCAAAGGTTGTTTGGACCCTGATAATTTCAAGGAATTTAGACTGGTTAAACGCACGCAGCTTAGCCATAATGTGGCAAAGTTCAGATTCTCTCTTCCGACCCCAAGCTCTGTCTTGGGGCTGCCAATTGGGGAGCATATGAGTTGCAGAGGAAAAGATAGTGAAGGTGAAGATGTTGTGAAACCTTACACTCCAACCACTTTGGATACAGATGTTGGGTACTTTGATTTGGTCATTAAGATGTATCCACAAGGGAGAATGTCCCATCATTTCCGCGAGATGCTAGAAGGTGATTACTTGGCTGTGAAAGGTCCTAAGGGACGTTTCAAATATGAGCCTAATGAAGTTGAGGCTTTTGGGATGCTTGCTGGAGGCACGGGCGTAACTCCGATGTTCCAGGTTACAAGAGCAATACTTGAAAATCCAGTGGACCGCACTAATATTCATCTTATTTACGCTAATCTTACTTATGAAGACATTCTCTTAAAGGAAGAACTGGATAGTCTTGCAACTAGATTCCCTTCCCGCTTTACCATCTACTATGTTCTTAATCAGCCTCCTGAGGGATGGGATGGTGGTGTTGGCTTTGTGACCGAGGAAATGATACGCCAGCATTGTCCCGCGCCATCCCCAAACGTTCGGATCTTGAGGTGCGGACCACCCCTCATGAACAAAACTATGGCTACGTACCTCAAGAGCATTGGCTATACTTCCCAAATGCAGTTCCAGTTCTGA 849 47.47 MATSLVRSHRPEFLTIAAAVVAVGVAAAYYFCVAKKSKPKGCLDPDNFKEFRLVKRTQLSHNVAKFRFSLPTPSSVLGLPIGEHMSCRGKDSEGEDVVKPYTPTTLDTDVGYFDLVIKMYPQGRMSHHFREMLEGDYLAVKGPKGRFKYEPNEVEAFGMLAGGTGVTPMFQVTRAILENPVDRTNIHLIYANLTYEDILLKEELDSLATRFPSRFTIYYVLNQPPEGWDGGVGFVTEEMIRQHCPAPSPNVRILRCGPPLMNKTMATYLKSIGYTSQMQFQF 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8895169 8902691 + Sed0004439.1 Sed05g1022 713648

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1022 282 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 138 276 IPR039261 -
Sed05g1022 282 CDD cyt_b5_reduct_like 51 282 - -
Sed05g1022 282 Gene3D - 140 282 IPR039261 -
Sed05g1022 282 Gene3D Translation factors 41 139 - -
Sed05g1022 282 PANTHER NADH-CYTOCHROME B5 REDUCTASE 17 282 IPR001834 GO:0004128(PANTHER)|GO:0016491(InterPro)|GO:0022900(PANTHER)
Sed05g1022 282 Pfam Oxidoreductase NAD-binding domain 159 265 IPR001433 GO:0016491(InterPro)
Sed05g1022 282 PRINTS Cytochrome B5 reductase signature 196 207 - -
Sed05g1022 282 PRINTS Cytochrome B5 reductase signature 135 149 - -
Sed05g1022 282 PRINTS Cytochrome B5 reductase signature 99 106 - -
Sed05g1022 282 PRINTS Cytochrome B5 reductase signature 77 88 - -
Sed05g1022 282 PRINTS Cytochrome B5 reductase signature 158 177 - -
Sed05g1022 282 PRINTS Cytochrome B5 reductase signature 252 260 - -
Sed05g1022 282 FunFam NADH-cytochrome b5 reductase 41 140 - -
Sed05g1022 282 SUPERFAMILY Riboflavin synthase domain-like 42 152 IPR017938 -
Sed05g1022 282 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 46 150 IPR017927 GO:0016491(InterPro)
Sed05g1022 282 FunFam NADH-cytochrome b5 reductase 140 282 - -
Sed05g1022 282 Pfam Oxidoreductase FAD-binding domain 51 149 IPR008333 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1022 K00326 - - csv:101219272 499.975
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2083 Sed-Chr3:14969593 Sed05g1022 Sed-Chr5:8895169 2.00E-114 dispersed
Sed05g1022 Sed-Chr5:8895169 Sed11g0102 Sed-Chr11:949917 1.70E-49 dispersed
Sed05g1022 Sed-Chr5:8895169 Sed10g1434 Sed-Chr10:30517212 3.40E-50 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g897 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed05g1022 . . . . . . Cpe16g00938 . Bhi10g00465 Tan07g0597 Cmetu05g0368 . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed05g0386 . 1 134 NADPH P450 reductases AT5G53560 76.9 2.4e-57 219.2
Sed05g0385 . 1 134 NADPH P450 reductases AT5G53560 76.9 2.4e-57 219.2
Sed01g3465 . 1 134 NADPH P450 reductases AT5G53560 75.4 3.1e-57 218.8
Sed02g1490 . 1 133 NADPH P450 reductases AT5G53560 68.4 1.9e-51 199.5
Sed12g0390 . 1 133 NADPH P450 reductases AT5G53560 67.7 2.5e-51 199.1
Sed04g2056 . 1 133 NADPH P450 reductases AT5G53560 61.7 9.3e-46 180.6
Sed05g0197 . 5 131 NADPH P450 reductases AT5G53560 65.4 1.2e-45 180.3
Sed02g1783 . 1 134 NADPH P450 reductases AT5G53560 56.0 4.5e-40 161.8
Sed01g3466 . 1 98 NADPH P450 reductases AT5G53560 73.5 5.5e-38 154.8
Sed05g0198 . 14 124 NADPH P450 reductases AT5G53560 65.8 7.1e-38 154.5
Sed12g0390 . 1 132 NADPH P450 reductases AT5G48810 64.2 1.4e-47 186.8
Sed02g1490 . 1 132 NADPH P450 reductases AT5G48810 63.4 1.8e-47 186.4
Sed04g2056 . 1 133 NADPH P450 reductases AT5G48810 58.5 3.1e-44 175.6
Sed01g3465 . 1 134 NADPH P450 reductases AT5G48810 58.1 7.0e-44 174.5
Sed05g0197 . 5 131 NADPH P450 reductases AT5G48810 62.0 9.1e-44 174.1
Sed05g0386 . 1 134 NADPH P450 reductases AT5G48810 59.6 2.6e-43 172.6
Sed05g0385 . 1 134 NADPH P450 reductases AT5G48810 59.6 2.6e-43 172.6
Sed02g1783 . 1 134 NADPH P450 reductases AT5G48810 52.2 2.8e-37 152.5
Sed12g0390 . 22 133 NADPH P450 reductases AT2G32720 84.8 1.3e-50 196.8
Sed02g1490 . 22 133 NADPH P450 reductases AT2G32720 83.0 2.1e-50 196.1
Sed04g2056 . 22 133 NADPH P450 reductases AT2G32720 76.8 5.4e-46 181.4
Sed05g0198 . 14 125 NADPH P450 reductases AT2G32720 70.5 1.8e-41 166.4
Sed05g0197 . 21 132 NADPH P450 reductases AT2G32720 69.6 1.5e-40 163.3
Sed05g0386 . 22 133 NADPH P450 reductases AT2G32720 63.4 9.3e-38 154.1
Sed05g0385 . 22 133 NADPH P450 reductases AT2G32720 63.4 9.3e-38 154.1
Sed01g3465 . 22 133 NADPH P450 reductases AT2G32720 63.4 1.2e-37 153.7
Sed03g2083 . 2 281 NADPH P450 reductases AT5G17770 79.3 1.8e-128 456.4
Sed02g0277 . 2 280 NADPH P450 reductases AT5G17770 73.1 9.1e-120 427.6
Sed05g1022 . 1 282 NADPH P450 reductases AT5G17770 68.9 1.2e-114 410.6
Sed05g0386 . 1 134 NADPH P450 reductases AT5G53560 76.9 2.4e-57 219.2
Sed05g0385 . 1 134 NADPH P450 reductases AT5G53560 76.9 2.4e-57 219.2
Sed01g3465 . 1 134 NADPH P450 reductases AT5G53560 75.4 3.1e-57 218.8
Sed02g1490 . 1 133 NADPH P450 reductases AT5G53560 68.4 1.9e-51 199.5
Sed12g0390 . 1 133 NADPH P450 reductases AT5G53560 67.7 2.5e-51 199.1
Sed04g2056 . 1 133 NADPH P450 reductases AT5G53560 61.7 9.3e-46 180.6
Sed05g0197 . 5 131 NADPH P450 reductases AT5G53560 65.4 1.2e-45 180.3
Sed02g1783 . 1 134 NADPH P450 reductases AT5G53560 56.0 4.5e-40 161.8
Sed01g3466 . 1 98 NADPH P450 reductases AT5G53560 73.5 5.5e-38 154.8
Sed05g0198 . 14 124 NADPH P450 reductases AT5G53560 65.8 7.1e-38 154.5
Sed12g0390 . 1 132 NADPH P450 reductases AT5G48810 64.2 1.4e-47 186.8
Sed02g1490 . 1 132 NADPH P450 reductases AT5G48810 63.4 1.8e-47 186.4
Sed04g2056 . 1 133 NADPH P450 reductases AT5G48810 58.5 3.1e-44 175.6
Sed01g3465 . 1 134 NADPH P450 reductases AT5G48810 58.1 7.0e-44 174.5
Sed05g0197 . 5 131 NADPH P450 reductases AT5G48810 62.0 9.1e-44 174.1
Sed05g0386 . 1 134 NADPH P450 reductases AT5G48810 59.6 2.6e-43 172.6
Sed05g0385 . 1 134 NADPH P450 reductases AT5G48810 59.6 2.6e-43 172.6
Sed02g1783 . 1 134 NADPH P450 reductases AT5G48810 52.2 2.8e-37 152.5
Sed12g0390 . 22 133 NADPH P450 reductases AT2G32720 84.8 1.3e-50 196.8
Sed02g1490 . 22 133 NADPH P450 reductases AT2G32720 83.0 2.1e-50 196.1
Sed04g2056 . 22 133 NADPH P450 reductases AT2G32720 76.8 5.4e-46 181.4
Sed05g0198 . 14 125 NADPH P450 reductases AT2G32720 70.5 1.8e-41 166.4
Sed05g0197 . 21 132 NADPH P450 reductases AT2G32720 69.6 1.5e-40 163.3
Sed05g0386 . 22 133 NADPH P450 reductases AT2G32720 63.4 9.3e-38 154.1
Sed05g0385 . 22 133 NADPH P450 reductases AT2G32720 63.4 9.3e-38 154.1
Sed01g3465 . 22 133 NADPH P450 reductases AT2G32720 63.4 1.2e-37 153.7
Sed03g2083 . 2 281 NADPH P450 reductases AT5G17770 79.3 1.8e-128 456.4
Sed02g0277 . 2 280 NADPH P450 reductases AT5G17770 73.1 9.1e-120 427.6
Sed05g1022 . 1 282 NADPH P450 reductases AT5G17770 68.9 1.2e-114 410.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000880 3 3 2 3 3 2 4 3 2 3 3 3 4 3 3 4 3 4 4 2 3 2 2 3 2 1 1 3 5 3 86