Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1041 ATGAGAAGATCAGGTGTGAACCAACCAAAAGTCAAACGTCTTGTGGGAAAATATGAAATTGGTCGAACCATTGGTGAGGGTACATTTGCAAAAGTGAAATTTGCCAAACATTCTGAGACTCAGGACCATTTTGCCATAAAGATCCTTGACAAAGAGAAAGTTCTGAAGCACAAGATGGCTGAACAGATCAAGAGGGAAATAGCCACAATGAAACTAATAAAGCATCCACATGTCGTCCAATTGATTGAGGTGATGGGTAGCAAAACAAAGATATTTATTGTTTTGGAGTTCGTTACTGGAGGAGAACTTTTTGATAAAATTGTAAATCATGGACGGATGAGCGAAAATGAGGCACGGAGATATGTCCAGCAGCTTATAAATGCTGTTGATTATTGTCATAGCAGGGGCGTATACCACAGGGATCTTAAGCCAGAAAATCTATTGTTAGATGCCTACGGAAATCTTAAAGTATCAGATTTTGGATTGAGTGCACTCTCACAACAAGTTAAGGATGATGGTCTGCTTCACACTACTTGTGGAACTCCAAACTATGTTGCTCCTGAGGTCCTTAATGATAGAGGGTACGACGGTGCAACTGCAGACTTATGGTCTTGTGGAGTCATACTCTTTGTACTACTTGCAGGCTACCTGCCTTTTGATGATTCTAATATCATAAACCTGTACAAAAAGATCTCGGCTGCTGAGTTTACTTGTCCTCCATGGCTCTCGTTAGATGTCATGAAATTGATAACTCGAATTTTGGATCCCAACCCAATGACTCGCATCACTGTACCCGAAATTTTGGAAGATGAATGGTGTAAGAAAGATTATAAGCCCCCGGTTTTCGAGGAGCACAAGATTGCAAACTTGGATGATGTAGAAGCAGTCTTTAAAGATTCAGAAGAGCACCATGTGACAGAGAAGAAGGAAGAACAGCCAGTAGCCATGAATGCCTTCGAGTTAATTTCGATGTCGAAAGGGCTCAACTTGGGAAATTTGTTTGGTACTGAACAGGAATTCAAGAGAGAAACTAGGTTTACCTCTAAATGCTCAGCTAATGAAATTGTACATAAAATTGAAGAAGCTGCCAAACCTCTTGGCTTTGATGTACAAAAGAAAAATTACAAGATGAGACTTGAAAATGTGAAAGCGGGTCGAAAGGGAAATCTTAATGTTGCCACAGAGATTTTGCAAGTGGCCCCTTCTGTTCACGTGGTTGAGATGCGAAAAGCAAAGGGAGACACTTTAGAGTTTCATAAGTTCTACAAAAACCTCTCCACCTCTCTTGAGGATGTTGTTTGGAAAACGGAGGAAGACATGCAAGAAACAAAGTGA 1335 40.52 MRRSGVNQPKVKRLVGKYEIGRTIGEGTFAKVKFAKHSETQDHFAIKILDKEKVLKHKMAEQIKREIATMKLIKHPHVVQLIEVMGSKTKIFIVLEFVTGGELFDKIVNHGRMSENEARRYVQQLINAVDYCHSRGVYHRDLKPENLLLDAYGNLKVSDFGLSALSQQVKDDGLLHTTCGTPNYVAPEVLNDRGYDGATADLWSCGVILFVLLAGYLPFDDSNIINLYKKISAAEFTCPPWLSLDVMKLITRILDPNPMTRITVPEILEDEWCKKDYKPPVFEEHKIANLDDVEAVFKDSEEHHVTEKKEEQPVAMNAFELISMSKGLNLGNLFGTEQEFKRETRFTSKCSANEIVHKIEEAAKPLGFDVQKKNYKMRLENVKAGRKGNLNVATEILQVAPSVHVVEMRKAKGDTLEFHKFYKNLSTSLEDVVWKTEEDMQETK 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9096315 9109170 - Sed0007958.4 Sed05g1041 713667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1041 444 Gene3D Transferase(Phosphotransferase) domain 1 98 280 - -
Sed05g1041 444 ProSiteProfiles NAF domain profile. 311 335 IPR018451 GO:0007165(InterPro)
Sed05g1041 444 SMART serkin_6 18 273 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g1041 444 Gene3D Kinase associated domain 1, KA1 310 435 - -
Sed05g1041 444 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 10 423 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Sed05g1041 444 CDD STKc_SnRK3 17 272 - -
Sed05g1041 444 Gene3D Phosphorylase Kinase; domain 1 7 97 - -
Sed05g1041 444 FunFam Non-specific serine/threonine protein kinase 9 97 - -
Sed05g1041 444 FunFam Non-specific serine/threonine protein kinase 11 313 - -
Sed05g1041 444 Pfam NAF domain 313 372 IPR004041 GO:0007165(InterPro)
Sed05g1041 444 ProSitePatterns Serine/Threonine protein kinases active-site signature. 137 149 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g1041 444 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524(InterPro)
Sed05g1041 444 CDD CIPK_C 317 431 - -
Sed05g1041 444 FunFam Non-specific serine/threonine protein kinase 310 435 - -
Sed05g1041 444 SUPERFAMILY Protein kinase-like (PK-like) 14 292 IPR011009 -
Sed05g1041 444 Pfam Protein kinase domain 18 272 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g1041 444 ProSiteProfiles Protein kinase domain profile. 18 273 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1039 Sed-Chr5:9096315 Sed05g1041 Sed-Chr5:9096315 2.50E-257 dispersed
Sed05g1041 Sed-Chr5:9096315 Sed08g2652 Sed-Chr8:38683291 2.90E-173 dispersed
Sed05g1040 Sed-Chr5:9096315 Sed05g1041 Sed-Chr5:9096315 2.50E-257 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79148 PF00069 Pkinase 1.10E-71 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1041 - - - 0.0