Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1084 ATGTATCAGCTGCAGAAGTCCAGGGAAGAACATACAACTTCTGAAGCCAGCTTTTGCAAAGAAGTGACTGAGTTGCGCCTTGCGTCGATAGATTCTCAAGCAGCAACGTCTCGTGCAGAAATCAAAGGTGCCTCTTTTAGGAAAGCTTCGATGGGTGGTTTTGACAGGAATCGTAATGATGTACACGAGCTACTTGATTGTACTGTTTGCATGAATTTAATGCATCCTCCAATTTACCAGTGTTCAAATGGCCACACTCTTTGTTCAAGCTGCAAGGTTAGGGTTCAAAACTGCTGTCCTACATGCCGCCATGAACTCGGGAACATAAGGTGCCTAGCACTGGAAAAGGTGGCCGAGTCGCTCGAGCTCCCTTGCGTATATGAAAACCAAGGTTGCATTGAAATGTTTCCATACAACAGCAAGCTTAAACATGAGAAGAACTGTAAATACCGCTCGTTCAAGTGCCCTTATGCTGGAGGTGAATGTTCTGTAACTGGTGACATTCCCTACCTTGTCATGCATCTCAAGGACGATCACGAGGTCGATATGCACGATGGATATTCCTTTAGCCATAGATATGTCAAATCCAATCCCCAAGAAGTTGAAAATGCTACATGGATGCTTACTGTTTTTAACTGCTTTGGAAGGCAATTCTGCTTGCACTTTGAAGCATTTCGCTTAGGAACAGCACCTGTTTACATGGCGTTCCTACGGTTCATGGGTGACGATGATGATGCAAAGCAGTTTTCTTATAGTCTAGAAGTTGGTGGAAATGGCAGAAAGCTCATATGGCAAGGTATACCGAGAAGTATCCGCGATAGCCATCAGAAGGTTCGGGACAGTCACGATGGATTGATCATTCAGAGGAAGATGGCACAATTCTGCTCTGGAAATGAGGAGCAGGAACTCAAGCTAAAGGTTACAGGGCGGATATGGAGAGTGAAGTGA 948 44.94 MYQLQKSREEHTTSEASFCKEVTELRLASIDSQAATSRAEIKGASFRKASMGGFDRNRNDVHELLDCTVCMNLMHPPIYQCSNGHTLCSSCKVRVQNCCPTCRHELGNIRCLALEKVAESLELPCVYENQGCIEMFPYNSKLKHEKNCKYRSFKCPYAGGECSVTGDIPYLVMHLKDDHEVDMHDGYSFSHRYVKSNPQEVENATWMLTVFNCFGRQFCLHFEAFRLGTAPVYMAFLRFMGDDDDAKQFSYSLEVGGNGRKLIWQGIPRSIRDSHQKVRDSHDGLIIQRKMAQFCSGNEEQELKLKVTGRIWRVK 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9965314 9967199 - Sed0000452.1 Sed05g1084 713710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1084 315 ProSiteProfiles Zinc finger RING-type profile. 67 103 IPR001841 -
Sed05g1084 315 FunFam E3 ubiquitin-protein ligase SINAT3 117 175 - -
Sed05g1084 315 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 42 310 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
Sed05g1084 315 SUPERFAMILY RING/U-box 50 107 - -
Sed05g1084 315 ProSiteProfiles Zinc finger SIAH-type profile. 120 180 IPR013010 GO:0008270(InterPro)
Sed05g1084 315 FunFam E3 ubiquitin-protein ligase SINAT5-like 176 308 - -
Sed05g1084 315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 119 IPR013083 -
Sed05g1084 315 Pfam Sina, zinc finger 116 191 - -
Sed05g1084 315 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 175 308 IPR008974 GO:0005515(InterPro)
Sed05g1084 315 Pfam Sina, TRAF-like domain 211 308 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Sed05g1084 315 CDD RING-HC_SIAHs 65 103 - -
Sed05g1084 315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 174 IPR013083 -
Sed05g1084 315 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 67 102 IPR049548 -
Sed05g1084 315 SUPERFAMILY TRAF domain-like 120 312 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3350 Sed-Chr1:62458713 Sed05g1084 Sed-Chr5:9965314 2.40E-172 dispersed
Sed05g1084 Sed-Chr5:9965314 Sed05g1087 Sed-Chr5:9965314 2.00E-144 dispersed
Sed05g1084 Sed-Chr5:9965314 Sed05g1085 Sed-Chr5:9965314 5.50E-190 tandem
Sed01g3349 Sed-Chr1:62458713 Sed05g1084 Sed-Chr5:9965314 2.40E-172 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1084 K04506 - csv:101213438 598.971