Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed05g1087 | ATGTTTCAGTGTTCAAATGGCCACACTCTTTGTTCAAGCTGCAAGGTTAGGGTTCAAAACTGCTGTCCTACATGCCGCCATGAACTCGGGAACATAAGGTGCCTAGCACTGGAAAAGGTGGCCGAGTCGCTCGAGCTCCCTTGCGTATATGAAAACCAAGGTTGCATTGAAATGTTTCCATACAACAGCAAGCTTAAACATGAGAAGAACTGTAAATACCGCTCGTTCAAGTGCCCTTATGCTGGAGGTGAATGTTCTGTAACTGGTGACATTCCCTACCTTGTCATGCATCTCAAGGACGATCACGAGGTCGATATGCACGATGGATATTCCTTTAGCCATAGATATGTCAAATCCAATCCCCAAGAAGTTGAAAATGCTACATGGATGCTTACTGTTTTTAACTGCTTTGGAAGGCAATTCTGCTTGCACTTTGAAGCATTTCGCTTAGGAACAGCACCTGTTTACATGGCGTTCCTACGGTTCATGGGTGACGATGATGATGCAAAGCAGTTTTCTTATAGTCTAGAAGTTGGTGGAAATGGCAGAAAGCTCATATGGCAAGGTATACCGAGAAGTATCCGCGATAGCCATCAGAAGGTTCGGGACAGTCACGATGGATTGATCATTCAGAGGAAGATGGCACAATTCTGCTCTGGAAATGAGGAGCAGGAACTCAAGCTAAAGGTTACAGGGCGGATATGGAGAGTGAAGTGA | 717 | 45.19 | MFQCSNGHTLCSSCKVRVQNCCPTCRHELGNIRCLALEKVAESLELPCVYENQGCIEMFPYNSKLKHEKNCKYRSFKCPYAGGECSVTGDIPYLVMHLKDDHEVDMHDGYSFSHRYVKSNPQEVENATWMLTVFNCFGRQFCLHFEAFRLGTAPVYMAFLRFMGDDDDAKQFSYSLEVGGNGRKLIWQGIPRSIRDSHQKVRDSHDGLIIQRKMAQFCSGNEEQELKLKVTGRIWRVK | 238 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 9965314 | 9968114 | - | Sed0000452.4 | Sed05g1087 | 713713 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed05g1087 | 238 | SUPERFAMILY | TRAF domain-like | 43 | 235 | - | - | |
Sed05g1087 | 238 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 97 | 231 | IPR008974 | GO:0005515(InterPro) | |
Sed05g1087 | 238 | ProSiteProfiles | Zinc finger SIAH-type profile. | 43 | 103 | IPR013010 | GO:0008270(InterPro) | |
Sed05g1087 | 238 | Pfam | Sina, TRAF-like domain | 134 | 231 | IPR018121 | GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro) | |
Sed05g1087 | 238 | FunFam | E3 ubiquitin-protein ligase SINAT3 | 40 | 98 | - | - | |
Sed05g1087 | 238 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 38 | 96 | IPR013083 | - | |
Sed05g1087 | 238 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 2 | 233 | IPR052088 | GO:0005737(PANTHER)|GO:0061630(PANTHER) | |
Sed05g1087 | 238 | FunFam | E3 ubiquitin-protein ligase SINAT5-like | 99 | 231 | - | - | |
Sed05g1087 | 238 | Pfam | Sina, zinc finger | 39 | 114 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g3351 | Sed-Chr1:62458713 | Sed05g1087 | Sed-Chr5:9965314 | 9.40E-134 | dispersed | |
Sed05g1084 | Sed-Chr5:9965314 | Sed05g1087 | Sed-Chr5:9965314 | 2.00E-144 | dispersed | |
Sed05g1085 | Sed-Chr5:9965314 | Sed05g1087 | Sed-Chr5:9965314 | 2.00E-144 | dispersed | |
Sed05g1087 | Sed-Chr5:9965314 | Sed14g0199 | Sed-Chr14:2257595 | 4.00E-116 | dispersed | |
Sed05g1086 | Sed-Chr5:9965314 | Sed05g1087 | Sed-Chr5:9965314 | 5.10E-79 | tandem | |
Sed05g1087 | Sed-Chr5:9965314 | Sed05g1088 | Sed-Chr5:9965314 | 8.60E-79 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed05g1087 | K04506 | - | csv:101213438 | 469.929 |