Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1087 ATGTTTCAGTGTTCAAATGGCCACACTCTTTGTTCAAGCTGCAAGGTTAGGGTTCAAAACTGCTGTCCTACATGCCGCCATGAACTCGGGAACATAAGGTGCCTAGCACTGGAAAAGGTGGCCGAGTCGCTCGAGCTCCCTTGCGTATATGAAAACCAAGGTTGCATTGAAATGTTTCCATACAACAGCAAGCTTAAACATGAGAAGAACTGTAAATACCGCTCGTTCAAGTGCCCTTATGCTGGAGGTGAATGTTCTGTAACTGGTGACATTCCCTACCTTGTCATGCATCTCAAGGACGATCACGAGGTCGATATGCACGATGGATATTCCTTTAGCCATAGATATGTCAAATCCAATCCCCAAGAAGTTGAAAATGCTACATGGATGCTTACTGTTTTTAACTGCTTTGGAAGGCAATTCTGCTTGCACTTTGAAGCATTTCGCTTAGGAACAGCACCTGTTTACATGGCGTTCCTACGGTTCATGGGTGACGATGATGATGCAAAGCAGTTTTCTTATAGTCTAGAAGTTGGTGGAAATGGCAGAAAGCTCATATGGCAAGGTATACCGAGAAGTATCCGCGATAGCCATCAGAAGGTTCGGGACAGTCACGATGGATTGATCATTCAGAGGAAGATGGCACAATTCTGCTCTGGAAATGAGGAGCAGGAACTCAAGCTAAAGGTTACAGGGCGGATATGGAGAGTGAAGTGA 717 45.19 MFQCSNGHTLCSSCKVRVQNCCPTCRHELGNIRCLALEKVAESLELPCVYENQGCIEMFPYNSKLKHEKNCKYRSFKCPYAGGECSVTGDIPYLVMHLKDDHEVDMHDGYSFSHRYVKSNPQEVENATWMLTVFNCFGRQFCLHFEAFRLGTAPVYMAFLRFMGDDDDAKQFSYSLEVGGNGRKLIWQGIPRSIRDSHQKVRDSHDGLIIQRKMAQFCSGNEEQELKLKVTGRIWRVK 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9965314 9968114 - Sed0000452.4 Sed05g1087 713713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1087 238 SUPERFAMILY TRAF domain-like 43 235 - -
Sed05g1087 238 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 97 231 IPR008974 GO:0005515(InterPro)
Sed05g1087 238 ProSiteProfiles Zinc finger SIAH-type profile. 43 103 IPR013010 GO:0008270(InterPro)
Sed05g1087 238 Pfam Sina, TRAF-like domain 134 231 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Sed05g1087 238 FunFam E3 ubiquitin-protein ligase SINAT3 40 98 - -
Sed05g1087 238 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 38 96 IPR013083 -
Sed05g1087 238 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 2 233 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
Sed05g1087 238 FunFam E3 ubiquitin-protein ligase SINAT5-like 99 231 - -
Sed05g1087 238 Pfam Sina, zinc finger 39 114 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3351 Sed-Chr1:62458713 Sed05g1087 Sed-Chr5:9965314 9.40E-134 dispersed
Sed05g1084 Sed-Chr5:9965314 Sed05g1087 Sed-Chr5:9965314 2.00E-144 dispersed
Sed05g1085 Sed-Chr5:9965314 Sed05g1087 Sed-Chr5:9965314 2.00E-144 dispersed
Sed05g1087 Sed-Chr5:9965314 Sed14g0199 Sed-Chr14:2257595 4.00E-116 dispersed
Sed05g1086 Sed-Chr5:9965314 Sed05g1087 Sed-Chr5:9965314 5.10E-79 tandem
Sed05g1087 Sed-Chr5:9965314 Sed05g1088 Sed-Chr5:9965314 8.60E-79 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1087 K04506 - csv:101213438 469.929