Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1088 ATGTATCAGCTGCAGAAGTCCAGGGAAGAACATACAACTTCTGAAGCCAGCTTTTGCAAAGAAGTGACTGAGTTGCGCCTTGCGTCGATAGATTCTCAAGCAGCAACGTCTCGTGCAGAAATCAAAGGTGCCTCTTTTAGGAAAGCTTCGATGGGTGGTTTTGACAGGAATCGTAATGATGTACACGAGCTACTTGATTGTACTGTTTGCATGAATTTAATGCATCCTCCAATTTACCAGTGTTCAAATGGCCACACTCTTTGTTCAAGCTGCAAGGTTAGGGTTCAAAACTGCTGTCCTACATGCCGCCATGAACTCGGGAACATAAGGTGCCTAGCACTGGAAAAGGTGGCCGAGTCGCTCGAGCTCCCTTGCGTATATGAAAACCAAGGTTGCATTGAAATGTTTCCATACAACAGCAAGCTTAAACATGAGAAGAACTGTAAATACCGCTCGTTCAAGTGCCCTTATGCTGGAGGTGAATGTTCTGTAACTGGTGACATTCCCTACCTTGTCATGCATCTCAAGGACGATCACGAGGTCGATATGCACGATGGATATTCCTTTAGCCATAGATATGTCAAATCCAATCCCCAAGAAGTTGAAAATGCTACATGGATGCTTACTGTAAGATCTCTTTTTGTCTATCTGTGTATGGATGGAGTTCTTTGGAAGACAATGCAACGTCCTCTGATTTCCATTCATTCCAATGCAGGTTTTTAA 723 43.71 MYQLQKSREEHTTSEASFCKEVTELRLASIDSQAATSRAEIKGASFRKASMGGFDRNRNDVHELLDCTVCMNLMHPPIYQCSNGHTLCSSCKVRVQNCCPTCRHELGNIRCLALEKVAESLELPCVYENQGCIEMFPYNSKLKHEKNCKYRSFKCPYAGGECSVTGDIPYLVMHLKDDHEVDMHDGYSFSHRYVKSNPQEVENATWMLTVRSLFVYLCMDGVLWKTMQRPLISIHSNAGF 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 9965314 9968114 - Sed0000452.5 Sed05g1088 713714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1088 240 ProSiteProfiles Zinc finger RING-type profile. 67 103 IPR001841 -
Sed05g1088 240 Pfam Sina, zinc finger 116 191 - -
Sed05g1088 240 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 67 102 IPR049548 -
Sed05g1088 240 SUPERFAMILY TRAF domain-like 120 212 - -
Sed05g1088 240 FunFam E3 ubiquitin-protein ligase SINAT3 117 175 - -
Sed05g1088 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 175 IPR013083 -
Sed05g1088 240 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 42 212 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
Sed05g1088 240 CDD RING-HC_SIAHs 65 103 - -
Sed05g1088 240 SUPERFAMILY RING/U-box 50 107 - -
Sed05g1088 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 119 IPR013083 -
Sed05g1088 240 ProSiteProfiles Zinc finger SIAH-type profile. 120 180 IPR013010 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1086 Sed-Chr5:9965314 Sed05g1088 Sed-Chr5:9965314 2.20E-143 dispersed
Sed05g1088 Sed-Chr5:9965314 Sed14g0199 Sed-Chr14:2257595 7.90E-72 dispersed
Sed05g1087 Sed-Chr5:9965314 Sed05g1088 Sed-Chr5:9965314 8.60E-79 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1088 K04506 - csv:101213438 397.512