Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1089 ATGGCTTGCTTTAAAGCTATTGTTCATTTGGTTTTATGTGTGAGTTTGATGGTTGGTTTGGTTACTGCTCAGCTCAGCTCCACGTTCTACGACACCACATGCCCGAATGTATCAAGCGTGGTGCATGGTGTGGTGGAGCAAGCTCTGGAAAGTGACGACCGAGCAGGCGCCAAGCTCATCCGTCTTCACTTCCACGATTGCTTTGTCGATGGATGTAATGGGTCGATTCTACTCGAAGATCAGGATGGTCTAGATGCTAGCGAGCTGGGAGCTCCTGCAAATGGAGGCATCACAGGTTTTAATATTGTCAACGACATCAAAACTGCGGTTGAGAATGTTTGCCCTGGCATTGTTTCTTGTGCTGACATTCTAGCCCTTGCTTCTCGAGACTCTGTCACCTTGGCGAGTGGCGAGGGTTGGATAGTTTTATTGGGAAGAAGAGATAGTAGAACAGCAAATTTGGATGGAGCAAGGAATTTTCTTCCAACTCCTTTCGATGATCTTCCCACTCTTCAAAAACATTTCTCCGATGTCGGCCTTGACGATACTACCGATCTCGTTGCTCTCTCGGGTGCACACACATTCGGGCGTGCAAGATGTCGATTTTTCAACGGACGGCTAAACACCTCCAACCCGGACCCAAACCTAGACTCGACATACGCGGATGAGCTCCGAGAAAACTGCGAAGCAGGACAAGACACATTCGTGAATCTGGACCCAACCACATCGAACACCTTTGACAACAACTACTTCACAAATCTTCAAGACAACCGTGGGCTTCTAGGAAGTGACCAAGCTTTATTCTCCACGAGCGGAGCTCCAACTTTGAGTACTGTCAACAACTTTGCCGACAACCCGGCCCAATTCGCCTCCGCTTTCGCTCAGTCCATGATTAAAATGGGAAATCTTAGACCTCTCACCGGAACCAGCGGAGAAATCAGGTCTAACTGCAGAAGGCTCAACTAA 966 48.45 MACFKAIVHLVLCVSLMVGLVTAQLSSTFYDTTCPNVSSVVHGVVEQALESDDRAGAKLIRLHFHDCFVDGCNGSILLEDQDGLDASELGAPANGGITGFNIVNDIKTAVENVCPGIVSCADILALASRDSVTLASGEGWIVLLGRRDSRTANLDGARNFLPTPFDDLPTLQKHFSDVGLDDTTDLVALSGAHTFGRARCRFFNGRLNTSNPDPNLDSTYADELRENCEAGQDTFVNLDPTTSNTFDNNYFTNLQDNRGLLGSDQALFSTSGAPTLSTVNNFADNPAQFASAFAQSMIKMGNLRPLTGTSGEIRSNCRRLN 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10037705 10039648 - Sed0023940.1 Sed05g1089 713715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1089 321 Gene3D Peroxidase, domain 2 162 300 - -
Sed05g1089 321 Gene3D - 28 321 - -
Sed05g1089 321 ProSitePatterns Peroxidases active site signature. 56 67 IPR019794 GO:0004601(InterPro)
Sed05g1089 321 SUPERFAMILY Heme-dependent peroxidases 24 321 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1089 321 PRINTS Plant peroxidase signature 295 308 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1089 321 PRINTS Plant peroxidase signature 98 111 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1089 321 PRINTS Plant peroxidase signature 136 151 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1089 321 PRINTS Plant peroxidase signature 253 270 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1089 321 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1089 321 PRINTS Plant peroxidase signature 117 127 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1089 321 PRINTS Plant peroxidase signature 184 196 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1089 321 PRINTS Plant peroxidase signature 237 252 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1089 321 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1089 321 FunFam Peroxidase 162 300 - -
Sed05g1089 321 ProSiteProfiles Plant heme peroxidase family profile. 24 321 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1089 321 ProSitePatterns Peroxidases proximal heme-ligand signature. 185 195 IPR019793 -
Sed05g1089 321 PRINTS Haem peroxidase superfamily signature 185 200 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1089 321 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1089 321 PRINTS Haem peroxidase superfamily signature 136 148 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1089 321 PRINTS Haem peroxidase superfamily signature 239 254 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1089 321 PRINTS Haem peroxidase superfamily signature 118 135 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1089 321 PANTHER PEROXIDASE 72-RELATED 14 319 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1089 321 CDD secretory_peroxidase 24 319 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Sed05g1089 321 Pfam Peroxidase 42 284 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3348 Sed-Chr1:62427165 Sed05g1089 Sed-Chr5:10037705 5.80E-139 dispersed
Sed05g0603 Sed-Chr5:4379712 Sed05g1089 Sed-Chr5:10037705 7.50E-105 dispersed
Sed05g1089 Sed-Chr5:10037705 Sed05g1091 Sed-Chr5:10127628 3.10E-108 dispersed
Sed05g1089 Sed-Chr5:10037705 Sed05g1090 Sed-Chr5:10095695 1.40E-145 tandem
Sed01g3340 Sed-Chr1:62162697 Sed05g1089 Sed-Chr5:10037705 1.50E-97 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1089 K00430 - csv:101212957 471.085