Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1090 ATGGCTTGTTTTAAAGCGATTGTTCATTTGGTTTTGTGTGTGAGTTTGGTGGTTGGTTCTGTTACAGCTCAACTCACCACCACGTTCTACAGCACCAGTTGTCCTAATCTATCGAACATTGTGCGAGGCGTCGTTCAGCAAGCTCTGCGAAGCGACAATAGAGCCGGCGCCAAACTCATCCGACTTCATTTCCACGACTGCTTTGTTGATGGATGTGATGGGTCAATTCTACTAGAAGATCAGCCTGGTATAGAGAGTGAGTTGGGTGCACCTGCGAATGGAAACATCACAGGATTTGATATTGTCAACAGCATCAAAACTGCCGTTGAGAGAGCTTGTCCTGGCGTTGTTTCTTGTGCTGATATTTTAGCCATTGCTTCCCGAGAATCCGTCACCTTGAGTCGGGGCCAAAGTTGGAATGTTTTATTGGGAAGAAGAGATAGTAGATCAGCAAATTTGGATGGAGCAAGGACTTTGCTTCCAACCCCATTTGATGATCTCACCACACTTCAAAATCATTTCACTGTTGCTGGCCTTGACCCCATAACCGATCTCGTGGCTCTATCAGGTGCACACACATTTGGGCGTGCTAGATGCAGATTCTTTGACACGCGACTAAACACCTCGAACCCGAACCAGGACCCGCCCATTGACGCAACCTATGCGAACCAGCTCAGACAAAACTGCCAACCGGGGCGAGACACATTTGTGAACTTGGACCCAACCACGCCGAACACCTTCGACAACAATTACTTCAAAAACCTTCAAGGCCTGCGCGGGCTTCTAAAAAGTGACCAAGTTCTGTTCTCCACGAGCGGAGCTCCAACTTTGAGTACGGTCAACAACTTCGCCAGCAACCCGACCCAATTCGCCTCTGCCTTTGGTCAATCAATGATTAACATGGGAAATATTAAACCTTTAACTGGAACCAATGGAGAAATCAGGTCTAATTGCAGAAGGCTCAACTAG 969 47.47 MACFKAIVHLVLCVSLVVGSVTAQLTTTFYSTSCPNLSNIVRGVVQQALRSDNRAGAKLIRLHFHDCFVDGCDGSILLEDQPGIESELGAPANGNITGFDIVNSIKTAVERACPGVVSCADILAIASRESVTLSRGQSWNVLLGRRDSRSANLDGARTLLPTPFDDLTTLQNHFTVAGLDPITDLVALSGAHTFGRARCRFFDTRLNTSNPNQDPPIDATYANQLRQNCQPGRDTFVNLDPTTPNTFDNNYFKNLQGLRGLLKSDQVLFSTSGAPTLSTVNNFASNPTQFASAFGQSMINMGNIKPLTGTNGEIRSNCRRLN 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10095695 10097946 - Sed0011405.1 Sed05g1090 713716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1090 322 PANTHER PEROXIDASE 72-RELATED 14 320 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1090 322 ProSitePatterns Peroxidases active site signature. 56 67 IPR019794 GO:0004601(InterPro)
Sed05g1090 322 CDD secretory_peroxidase 24 320 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Sed05g1090 322 Gene3D - 29 322 - -
Sed05g1090 322 FunFam Peroxidase 161 301 - -
Sed05g1090 322 SUPERFAMILY Heme-dependent peroxidases 24 322 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1090 322 ProSiteProfiles Plant heme peroxidase family profile. 24 322 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1090 322 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1090 322 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1090 322 PRINTS Plant peroxidase signature 116 126 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1090 322 PRINTS Plant peroxidase signature 183 195 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1090 322 PRINTS Plant peroxidase signature 254 271 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1090 322 PRINTS Plant peroxidase signature 97 110 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1090 322 PRINTS Plant peroxidase signature 238 253 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1090 322 PRINTS Plant peroxidase signature 296 309 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1090 322 PRINTS Plant peroxidase signature 135 150 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1090 322 ProSitePatterns Peroxidases proximal heme-ligand signature. 184 194 IPR019793 -
Sed05g1090 322 PRINTS Haem peroxidase superfamily signature 135 147 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1090 322 PRINTS Haem peroxidase superfamily signature 184 199 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1090 322 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1090 322 PRINTS Haem peroxidase superfamily signature 117 134 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1090 322 PRINTS Haem peroxidase superfamily signature 240 255 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1090 322 Gene3D Peroxidase, domain 2 161 302 - -
Sed05g1090 322 Pfam Peroxidase 41 286 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1090 322 FunFam Peroxidase 28 169 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1090 Sed-Chr5:10095695 Sed05g1092 Sed-Chr5:10191295 2.60E-94 dispersed
Sed05g1089 Sed-Chr5:10037705 Sed05g1090 Sed-Chr5:10095695 1.40E-145 tandem
Sed05g1090 Sed-Chr5:10095695 Sed05g1091 Sed-Chr5:10127628 1.80E-111 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1090 K00430 - csv:101212957 436.417