Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1092 ATGGCCTCCTCCAATATTGTACCCTTCTTCTTCTTTGCGGCCCTTCTCTTCGGAGGCTCCATCGCTCAACTCTCCGAAAACTTCTACGACAAATCGTGTCCTCGTCTCCCCAACATTGTCCGCGCCGCCGTCAAGAGGGCCATTGAATCCGACATCCGTGCCGGTGCTAAACTCATCCGCCTCCATTTCCACGACTGCTTCGTCAATGGCTGCGATGGCTCTGTTCTGCTAGAGGATGCTCCCGGCATAGTCAGTGAGCTCAACTCCCCTGGAAATCAAGGCATCCAAGGACTTGAGCATGTGGACGCCATCAAAGCTGCTGTCGAGAGCGAATGCCCCGGCATCGTCTCGTGTGCTGATATCCTAGCTCAGGCCTCTAAAGACTCCGTCGATGTGCAAGGGGGGCCGAGTTGGAGAGTGTTATACGGAAGAAGAGACAGCAGAATAGCAAACAAAACCGGTGCAGACATAGGGCTAGCCAGCCCCTTCGAAACCTTAGCCGAACTCAAAGCCAAATTCGCGGCAGTGGGGCTTAACTCCCTGGACCTCGTAGCTCTATCCGGAGCGCACACGTTCGGCCGGTCCCGGTGCACGTTTTTCAGCCACAGGTTTGCAAATTTCAACAACACGGGAAAACCAGATCCAACCCTAGACGCCAACTACAGGAGATTCCTAGAAGGGGTGTGTTCGGCAGGCCCAAACACACGAGCCAACTTCGACCCCACAACACCGGACGTGTTCGACAAAAACTACTACACAAATCTTCAAGTAAAAAAGGGGCTGCTCCAAAGCGACCAAGAGCTGTTCTCCACTCCCGGAGCTGATACCATCGACATTGTCAACAGCTTCGCCGCTAGAGAAGGGACTTTCTTCAAGGAGTTCCGCCAGTCCATGATCAATATGGGGAACATTAAGCCGTTGACTGGCAGGCGTGGTGAAGTTAGGAGAAACTGCAGGAGGGTCAACGCTGCCTTTGGTGGAGAAGGGCATGATGTTATGTAA 1002 53.49 MASSNIVPFFFFAALLFGGSIAQLSENFYDKSCPRLPNIVRAAVKRAIESDIRAGAKLIRLHFHDCFVNGCDGSVLLEDAPGIVSELNSPGNQGIQGLEHVDAIKAAVESECPGIVSCADILAQASKDSVDVQGGPSWRVLYGRRDSRIANKTGADIGLASPFETLAELKAKFAAVGLNSLDLVALSGAHTFGRSRCTFFSHRFANFNNTGKPDPTLDANYRRFLEGVCSAGPNTRANFDPTTPDVFDKNYYTNLQVKKGLLQSDQELFSTPGADTIDIVNSFAAREGTFFKEFRQSMINMGNIKPLTGRRGEVRRNCRRVNAAFGGEGHDVM 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10191295 10193208 - Sed0002079.1 Sed05g1092 713718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1092 333 PRINTS Haem peroxidase superfamily signature 55 69 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1092 333 PRINTS Haem peroxidase superfamily signature 116 133 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1092 333 PRINTS Haem peroxidase superfamily signature 134 146 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1092 333 PRINTS Haem peroxidase superfamily signature 182 197 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1092 333 PRINTS Haem peroxidase superfamily signature 240 255 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1092 333 SUPERFAMILY Heme-dependent peroxidases 23 322 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1092 333 CDD secretory_peroxidase 23 321 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Sed05g1092 333 Gene3D - 28 322 - -
Sed05g1092 333 PANTHER PEROXIDASE 72-RELATED 14 321 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1092 333 FunFam Peroxidase 27 172 - -
Sed05g1092 333 Gene3D Peroxidase, domain 2 160 301 - -
Sed05g1092 333 ProSiteProfiles Plant heme peroxidase family profile. 23 322 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1092 333 PRINTS Plant peroxidase signature 134 149 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1092 333 PRINTS Plant peroxidase signature 115 125 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1092 333 PRINTS Plant peroxidase signature 33 52 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1092 333 PRINTS Plant peroxidase signature 238 253 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1092 333 PRINTS Plant peroxidase signature 96 109 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1092 333 PRINTS Plant peroxidase signature 181 193 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1092 333 PRINTS Plant peroxidase signature 57 77 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1092 333 PRINTS Plant peroxidase signature 254 271 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1092 333 PRINTS Plant peroxidase signature 296 309 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1092 333 ProSitePatterns Peroxidases active site signature. 55 66 IPR019794 GO:0004601(InterPro)
Sed05g1092 333 Pfam Peroxidase 40 285 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1092 333 ProSitePatterns Peroxidases proximal heme-ligand signature. 182 192 IPR019793 -
Sed05g1092 333 FunFam Peroxidase 160 301 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3340 Sed-Chr1:62162697 Sed05g1092 Sed-Chr5:10191295 6.50E-109 dispersed
Sed01g3341 Sed-Chr1:62178812 Sed05g1092 Sed-Chr5:10191295 3.10E-111 dispersed
Sed01g3346 Sed-Chr1:62340807 Sed05g1092 Sed-Chr5:10191295 1.90E-161 dispersed
Sed05g1090 Sed-Chr5:10095695 Sed05g1092 Sed-Chr5:10191295 2.60E-94 dispersed
Sed05g1092 Sed-Chr5:10191295 Sed05g1095 Sed-Chr5:10280518 4.50E-102 dispersed
Sed05g1091 Sed-Chr5:10127628 Sed05g1092 Sed-Chr5:10191295 8.20E-101 tandem
Sed05g1092 Sed-Chr5:10191295 Sed05g1093 Sed-Chr5:10219872 1.50E-134 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1092 K00430 - csv:101217781 570.852