Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1093 ATGGGGTCTTCCAAAGTAGCAGCCTTCCTTTTCTTTGTGGGTCTTTTGTTTGGTGCCTCTTTCGCCCAGCTCTCCGAGACCTTCTACGACCAAACATGTCCTCGCCTCCCCAACATTGTCCGCCGCGAGGTCAAGAAAGCTATCGAGACAGACATCCGTGCCGGTGCCAAACTCATCCGCTTCCATTTCCACGACTGCTTCGTCCAAGGCTGTGATGGCTCTGTTTTGCTGGTGGACCCTCCGGGCGTTGAAAGTGAGCTCATTGGACTTGGGAATTTAGGAATTCAAGGTCAAGAAATTGTCGACACCATTAAAGCCGCCGTCGAGGCCGAATGCCCCGGCGTTGTCTCCTGCGCGGATATTCTCGCTCAGGCCTCCAAAGACTCTGTCGACGTGCAAGGAGGGCCTAGTTGGAGAGTTCTATACGGAAGAAGAGACAGCAGAACAGCCAATAAAACAGGGGCTGATAATCTCCCAAGTCCCTTCGAAGGACTCGATGTGCTCCTGAAAAAATTCTGTGACCTCGACCTCAATGCCACTGATCTCGTTGCTCTATCTGGGGCACATACGTTCGGTCGATCGAGGTGTCGTTTCTTCAGCGGGCGTTTCTCAAACTTCAGTGGAACCGGGCAGCCAGATCCGACACTGGACCCATCATACAGGCAACAGCTTGAAACAGCTTGTATAAGTGATGACACCCGAGTGAATTTCGATCCGACAACGCCGGACACATTCGATAAGAATTACTACACCAATCTTCAAGCCAACAAAGGGCTCTTGACAAGCGACCAAGTGCTGTTTAGCACGCCAGGGTCCGTCACTGCCGGCATTGTGAACCTGCTTGCGTCTCGAGAAGGGACCTTCTTTAGACACTTTAGGAACTCCATGATCAAGATGGGCAACATTAAACCTTTAACTGGAACTCAAGGGGAAATCAGAAGACACTGCGGGAGGGTTAATGACTTGGCTTCCGAAACAGGCCATGATGTTATGTAA 996 51.2 MGSSKVAAFLFFVGLLFGASFAQLSETFYDQTCPRLPNIVRREVKKAIETDIRAGAKLIRFHFHDCFVQGCDGSVLLVDPPGVESELIGLGNLGIQGQEIVDTIKAAVEAECPGVVSCADILAQASKDSVDVQGGPSWRVLYGRRDSRTANKTGADNLPSPFEGLDVLLKKFCDLDLNATDLVALSGAHTFGRSRCRFFSGRFSNFSGTGQPDPTLDPSYRQQLETACISDDTRVNFDPTTPDTFDKNYYTNLQANKGLLTSDQVLFSTPGSVTAGIVNLLASREGTFFRHFRNSMIKMGNIKPLTGTQGEIRRHCGRVNDLASETGHDVM 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10219872 10221597 - Sed0000281.1 Sed05g1093 713719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1093 331 ProSitePatterns Peroxidases proximal heme-ligand signature. 181 191 IPR019793 -
Sed05g1093 331 CDD secretory_peroxidase 23 319 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Sed05g1093 331 PRINTS Plant peroxidase signature 134 149 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1093 331 PRINTS Plant peroxidase signature 96 109 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1093 331 PRINTS Plant peroxidase signature 252 269 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1093 331 PRINTS Plant peroxidase signature 57 77 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1093 331 PRINTS Plant peroxidase signature 115 125 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1093 331 PRINTS Plant peroxidase signature 180 192 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1093 331 PRINTS Plant peroxidase signature 294 307 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1093 331 PRINTS Plant peroxidase signature 33 52 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1093 331 PRINTS Plant peroxidase signature 236 251 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1093 331 Gene3D - 28 320 - -
Sed05g1093 331 PRINTS Haem peroxidase superfamily signature 116 133 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1093 331 PRINTS Haem peroxidase superfamily signature 181 196 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1093 331 PRINTS Haem peroxidase superfamily signature 238 253 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1093 331 PRINTS Haem peroxidase superfamily signature 55 69 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1093 331 PRINTS Haem peroxidase superfamily signature 134 146 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1093 331 FunFam Peroxidase 159 299 - -
Sed05g1093 331 ProSiteProfiles Plant heme peroxidase family profile. 23 320 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1093 331 SUPERFAMILY Heme-dependent peroxidases 23 320 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1093 331 FunFam Peroxidase 27 167 - -
Sed05g1093 331 Gene3D Peroxidase, domain 2 159 299 - -
Sed05g1093 331 Pfam Peroxidase 40 282 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1093 331 PANTHER PEROXIDASE 72-RELATED 13 319 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1091 Sed-Chr5:10127628 Sed05g1093 Sed-Chr5:10219872 2.60E-99 dispersed
Sed05g1093 Sed-Chr5:10219872 Sed05g1095 Sed-Chr5:10280518 2.90E-101 dispersed
Sed05g1092 Sed-Chr5:10191295 Sed05g1093 Sed-Chr5:10219872 1.50E-134 tandem
Sed05g1093 Sed-Chr5:10219872 Sed05g1094 Sed-Chr5:10241298 1.10E-71 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1093 K00430 - csv:101212230 462.996