Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1096 ATGGCTTCCCCAAAATTTACAGCCTTTGTTGCAGTGGTAGCCTTGTTGCTGGCCGGGACCTCTCTCGCACAGCTAAGCCCTTTCTTCTACGCCCATACATGCCCTAGCTTGGATTTAATTGTTGGATCTGCAGTCTCTAAAGCCCTAAAAAGCGATGATCGAGCAGCTGCCAAGCTCATCCGCCTCCACTTTCATGACTGCTTCGCTAATGGGTGTGACGGGTCAGTGCTACTTGAGGACGTACCAGGAGTCATCGATAGTGAACTAAATGCAGGTCCAAACAATGGGATCCAAGGGCTGGACATTGTAGACAACATCAAAGCAGCCGTTGAAAAGGCCTGCCCTGGCATTGTTTCATGTGCTGACATCTTAGCCCTCTCAGCTCAAATTTCTGTTGAAATTGTAAACAATCAACGGCCAAGTTGGATACCTCTAATGGGACGAAGAGACAGCAATATAGCCAACAGGACCGCAGCGGAAAATATTCCAGGTCCAGCCTTGACTTTAGATGTACTCAAAGCCCGATTCGCAGCTCTTGGGCTTAATTCTACAGACCTTGTGGCTCTATCGGGAGCACACACGATCGGTAAAGCAAGATGCTTATTCTTCAACGAGCGGCTCGACAACTTCAACAATACCGCCTTACCTGACCCGACATTGGATGCTACTTATAGGAAGTATCTCCATCAAGCTTGCACCAATACAACAACACGAGTGAACCTTAACCTATTCTCACCTAACCGATTCGACAATTACTACTACCAAGGTCTTGTATTCAATAAGGGACTTCTCCAAAGTGATCAAGAGCTTTTCTCCACTCCTGGGGCTGATACCACTGCCATTGTCAACACCTTTGTCGACAGCAGGCATCTGTTCTTTGCTCAATTTGGGAAATCCATGGTCAAAATGGGAAATCTCACACCTCCACCTGGCACTCCAACGCAAATCAGGTTGAACTGTAGGAGGGTCAACTCACGTGACAAGCTACTTTCAGCGAGTTCTTAA 1005 47.36 MASPKFTAFVAVVALLLAGTSLAQLSPFFYAHTCPSLDLIVGSAVSKALKSDDRAAAKLIRLHFHDCFANGCDGSVLLEDVPGVIDSELNAGPNNGIQGLDIVDNIKAAVEKACPGIVSCADILALSAQISVEIVNNQRPSWIPLMGRRDSNIANRTAAENIPGPALTLDVLKARFAALGLNSTDLVALSGAHTIGKARCLFFNERLDNFNNTALPDPTLDATYRKYLHQACTNTTTRVNLNLFSPNRFDNYYYQGLVFNKGLLQSDQELFSTPGADTTAIVNTFVDSRHLFFAQFGKSMVKMGNLTPPPGTPTQIRLNCRRVNSRDKLLSASS 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10334704 10335872 - Sed0018783.1 Sed05g1096 713722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1096 334 SUPERFAMILY Heme-dependent peroxidases 24 324 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1096 334 ProSitePatterns Peroxidases active site signature. 56 67 IPR019794 GO:0004601(InterPro)
Sed05g1096 334 PRINTS Plant peroxidase signature 256 273 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1096 334 PRINTS Plant peroxidase signature 117 127 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1096 334 PRINTS Plant peroxidase signature 98 111 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1096 334 PRINTS Plant peroxidase signature 240 255 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1096 334 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1096 334 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1096 334 PRINTS Plant peroxidase signature 184 196 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1096 334 PRINTS Plant peroxidase signature 298 311 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1096 334 CDD secretory_peroxidase 24 323 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Sed05g1096 334 PANTHER PEROXIDASE 72-RELATED 13 323 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1096 334 ProSiteProfiles Plant heme peroxidase family profile. 24 324 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1096 334 Gene3D Peroxidase, domain 2 163 303 - -
Sed05g1096 334 ProSitePatterns Peroxidases proximal heme-ligand signature. 185 195 IPR019793 -
Sed05g1096 334 PRINTS Haem peroxidase superfamily signature 118 135 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1096 334 PRINTS Haem peroxidase superfamily signature 242 257 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1096 334 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1096 334 PRINTS Haem peroxidase superfamily signature 138 150 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1096 334 PRINTS Haem peroxidase superfamily signature 185 200 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1096 334 Pfam Peroxidase 43 287 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed05g1096 334 Gene3D - 29 324 - -
Sed05g1096 334 FunFam Peroxidase 163 303 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1094 Sed-Chr5:10241298 Sed05g1096 Sed-Chr5:10334704 2.50E-88 dispersed
Sed05g1096 Sed-Chr5:10334704 Sed13g1017 Sed-Chr13:8299105 5.10E-69 dispersed
Sed05g1095 Sed-Chr5:10280518 Sed05g1096 Sed-Chr5:10334704 1.70E-130 tandem
Sed05g1096 Sed-Chr5:10334704 Sed05g1097 Sed-Chr5:10375138 3.80E-72 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1096 K00430 - csv:101211752 453.366