Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1123 ATGGATTCGGCTGAGCCATCCACACCAGCACCAGCACAGCTCAATGTTGCGAGCCTCAAAGCCCTGAAGGTGCTCGGAAAAGGAGCCATGGGGACTGTGTTTCTGGTCCAGGATGAGCCTTCTAATTCCCCCTTCGCTCTCAAGGTAGTCGACAAATCGTCTTTCCTGTCTAAGCTCGACGCCGAGCGCCGAGCCCGTTGGGAGCTTCAGACTCTTTCCCGCTTGTCGCTCCCTCAGCCCCACCCCTTTCTCCCTCACATCATTGCCTCCTTCGAGTCTGACGAGTTGTTGGGATGGGCGGTTCCCTACTGTCCCGGCGGCGACCTTAACGTCTTGCGATACCGCCAGATGGACCGGGTTTTTTCGCCCCCTGTCATTCGCTTCTATTTGGCGGAAATCATCTGTGCGCTCCAGCATCTTCACAGCATGGCCATTGTCTACCGAGATTTGAAGCCGGAGAACGTATTGATTCAACAATCCGGTCACATAACCCTCACGGATTTTGATTTGTCGCGTACTTTGAGTCGCAGAACGGTGAACGACGTCGCTTCGCTTGACAACTCCGCCCACGACAAGCCGCCGGTCGTTGGCCGGCACAATCACCGGAGGAACTTTACGCGATGGATCATGACCACCTCCAACGTTAAAAACGGTTTGAGAAAGGCTAAGTCAGCTCGGGTCAGCCCGGTGAGCCGCCGGAAGCCCAGTTTCGCCAACAACGGGGAGCGGTCGAACTCGTTCGTGGGGACGGTGGAGTACGTCTCGCCGGAGATCGTTCGAGGGGAGGGACATGAATTCGCCGTCGACTGGTGGGCCTTGGGGATTCTCACGTACGAGATGCTGTACGGAACGACGCCGTTCAAGGGGAAGAGCCGCAAGGAGACGTTTCGAAACGTTCTGGTCAAAGCCCCGGAGTTGATCGGGAAGCGTTCGGATTTAACGGATTTGATCGAACGGTTGCTGGTGAAGGACCCCACCCGGCGGCTGGGGTACGTACGAGGCGCGTGTGAGATCAAAGAGCATGCGTTTTTTAACGGGGTGAAGTGGGACCTACTAACCGAGGTGACGCGACCGCCCTTTTTACCCACAGAACTAACGGAGAATTTAACGCTCGGTGGCGTGGGTATCGCAGAATACTTTCATAAACAGAGATCGCCGCCGTCGTCGTCGTCAACTCCGTCCACCTCGTTCCGTTGGCAGGATAACAACATGTCTTTTACGGAGTTCTAA 1230 55.93 MDSAEPSTPAPAQLNVASLKALKVLGKGAMGTVFLVQDEPSNSPFALKVVDKSSFLSKLDAERRARWELQTLSRLSLPQPHPFLPHIIASFESDELLGWAVPYCPGGDLNVLRYRQMDRVFSPPVIRFYLAEIICALQHLHSMAIVYRDLKPENVLIQQSGHITLTDFDLSRTLSRRTVNDVASLDNSAHDKPPVVGRHNHRRNFTRWIMTTSNVKNGLRKAKSARVSPVSRRKPSFANNGERSNSFVGTVEYVSPEIVRGEGHEFAVDWWALGILTYEMLYGTTPFKGKSRKETFRNVLVKAPELIGKRSDLTDLIERLLVKDPTRRLGYVRGACEIKEHAFFNGVKWDLLTEVTRPPFLPTELTENLTLGGVGIAEYFHKQRSPPSSSSTPSTSFRWQDNNMSFTEF 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10966547 10968281 + Sed0015575.1 Sed05g1123 713749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1123 409 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g1123 409 FunFam Serine/threonine-protein kinase OXI1 108 176 - -
Sed05g1123 409 Gene3D Transferase(Phosphotransferase) domain 1 242 363 - -
Sed05g1123 409 SMART serkin_6 19 344 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g1123 409 Gene3D Phosphorylase Kinase; domain 1 20 107 - -
Sed05g1123 409 SUPERFAMILY Protein kinase-like (PK-like) 21 398 IPR011009 -
Sed05g1123 409 Gene3D Transferase(Phosphotransferase) domain 1 108 176 - -
Sed05g1123 409 MobiDBLite consensus disorder prediction 383 409 - -
Sed05g1123 409 MobiDBLite consensus disorder prediction 382 409 - -
Sed05g1123 409 Pfam Protein kinase domain 239 344 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g1123 409 Pfam Protein kinase domain 21 178 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g1123 409 ProSiteProfiles Protein kinase domain profile. 19 344 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g1123 409 PANTHER FLIPPASE KINASE 1-RELATED 12 364 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Sed05g1123 409 FunFam Serine/threonine-protein kinase OXI1 242 363 - -
Sed05g1123 409 ProSitePatterns Protein kinases ATP-binding region signature. 25 48 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1123 Sed-Chr5:10966547 Sed09g0994 Sed-Chr9:32525343 1.10E-70 dispersed
Sed05g1123 Sed-Chr5:10966547 Sed07g0253 Sed-Chr7:2016275 8.10E-77 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79150 PF00069 Pkinase 2.60E-30 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1123 - - - 0.0