Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1127 ATGGGATCCATGAATTCAAACAATTGGCTTTCATTTCCACTTTCACCCACCAATCCTTCTGTACCACCAACTCAATCCCATCATTTCTCTTTGGGTAATTTGGAGAATGATAATATGGAAATCCCATTCCAAGCCCATGAGTGGAATCTGATACATAGTCAAGGAGGTAGTGAAGTTCCAAAAGTTGCAGACTTTTTAGGAGTAAGCAAGGCAGAAAATGAAACCCATCTCATTGGGTTTAATGAAATTCATCAGGGAAATAATACAGACTACTTGTTTCCAATCACAAGATTGGTGCCTGTTCAACAAGCCACACCAACATTAAATGTGGAATCTACTACTAACTTTGACCTTCAAGACAATTCAAATAGTTTGCAGTCTTTGACCCTTTCAATGGGCAGTGGCAAGGCCTCTACTTGTGACACCACCCCTGATAGTACCTCCAATACCACTTTGGATGTCACTCCTCGAAGAACTTTGGACACTTTTGGTCAAAGAACTTCTATTTATCGCGGTGTCACCAGACATCGATGGACGGGGAGGTATGAAGCACACTTGTGGGATAATAGTTGCCGGAGGGAAGGGCAGTCAAGGAAGGGTCGTCAAGGTGGGTATGATAAAGAAGAGAAAGCTGCTAGGGCTTATGATCTTGCTGCATTGAAGTACTGGGGAACATCCACCACCACAAACTTTCCTATTAGTAACTATGAAAAGGAAGTGGATGAAATGAAGCACATGACAAGACAAGAATTTGTGGCGTCCATTAGAAGGAAGAGTAGTGGGTTCTCAAGGGGGGCATCAATGTATCGTGGAGTTACAAGGCACCACCAGCATGGAAGATGGCAGGCTAGGATTGGAAGAGTTGCAGGAAACAAAGATCTTTATTTGGGAACTTTCAGTACGGAAGAGGAAGCAGCAGAAGCATACGACGTAGCGGCAATAAAATTCAGAGGGCTAAATGCAGTGACAAACTTCGACATGAGCCGTTACGACGTGAAAAGCATATTAGAAAACAACACTCTCCCGATTGGTGGCGGTGCAGCAAAGCGCCTCAAAGAAGCCCAAGCCATCGAGTCGTCTCGCAAGCGTGACGAAATGATTGCACTCGGCTCCACCTCAGCTGCTTTCCAGTACGGCAGCTCGTCCAGTACTCATAATAATAATTACCCTTTACTCCAACACCCCAGTCTCAACCTCCTCGACCCGCAGCCGTTGCTCTCTCTTCAAAACCACCACGACATTTCTCCCTACACCACCCACGATCCGGCCTCGTTTCATCAGGCTAATTCTTACCTCCAACTTCACCACCATCACCCATCTGCAGATTCCCCTTATGCTAACAGCACCACCCATCAATTCTACGGTGGGGGCGGGGGCATAGGTGGATATCTTCATAATCATCCCGCTTTGCTTCATGGGATGATCAATATGAGCAGCGTCGGGGGCGGAGGAGGAGGAGGGGCTAATTTGGAGACTAGTAACAACAATAATAATAATAGTGTTCTGTCCGTTGCGAGTCATTTTAGTAATAACAATAATGCAAATAATGGAGGGTACCTTGCTAATGCATTTGGGATGGGATCTACATCCGAGGCTACAAACGGCAGCGGCGGGGCGGGGGAGGAGTACGCCATGGTTAAGGTTGATTATGATATGCCTAATTCTGGTGGGGGGTATGGGAGCTGGTCAGGGGATTCGGTGCAAGGCTCTAACGTGAATGTCAATGGGGTTTTTTCAATGTGGAATGATTGA 1752 46.23 MGSMNSNNWLSFPLSPTNPSVPPTQSHHFSLGNLENDNMEIPFQAHEWNLIHSQGGSEVPKVADFLGVSKAENETHLIGFNEIHQGNNTDYLFPITRLVPVQQATPTLNVESTTNFDLQDNSNSLQSLTLSMGSGKASTCDTTPDSTSNTTLDVTPRRTLDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEEKAARAYDLAALKYWGTSTTTNFPISNYEKEVDEMKHMTRQEFVASIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDVAAIKFRGLNAVTNFDMSRYDVKSILENNTLPIGGGAAKRLKEAQAIESSRKRDEMIALGSTSAAFQYGSSSSTHNNNYPLLQHPSLNLLDPQPLLSLQNHHDISPYTTHDPASFHQANSYLQLHHHHPSADSPYANSTTHQFYGGGGGIGGYLHNHPALLHGMINMSSVGGGGGGGANLETSNNNNNNSVLSVASHFSNNNNANNGGYLANAFGMGSTSEATNGSGGAGEEYAMVKVDYDMPNSGGGYGSWSGDSVQGSNVNVNGVFSMWND 583
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11131304 11135817 - Sed0025715.1 Sed05g1127 713753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1127 583 CDD AP2 267 328 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g1127 583 FunFam AP2-like ethylene-responsive transcription factor ANT 168 234 - -
Sed05g1127 583 ProSiteProfiles AP2/ERF domain profile. 169 232 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g1127 583 FunFam AP2-like ethylene-responsive transcription factor 267 328 - -
Sed05g1127 583 Gene3D AP2/ERF domain 268 328 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g1127 583 Gene3D AP2/ERF domain 169 234 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g1127 583 SUPERFAMILY DNA-binding domain 267 328 IPR016177 GO:0003677(InterPro)
Sed05g1127 583 SUPERFAMILY DNA-binding domain 168 234 IPR016177 GO:0003677(InterPro)
Sed05g1127 583 PRINTS Ethylene responsive element binding protein signature 170 181 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g1127 583 PRINTS Ethylene responsive element binding protein signature 308 328 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g1127 583 SMART rav1_2 169 238 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g1127 583 SMART rav1_2 268 332 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g1127 583 CDD AP2 168 234 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g1127 583 Pfam AP2 domain 269 318 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g1127 583 ProSiteProfiles AP2/ERF domain profile. 268 326 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed05g1127 583 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 129 417 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1127 Sed-Chr5:11131304 Sed11g0715 Sed-Chr11:10510413 6.70E-101 dispersed
Sed05g1127 Sed-Chr5:11131304 Sed07g1816 Sed-Chr7:20566170 3.60E-94 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38501 PF00847 AP2 2.80E-09 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1127 K09285 - csv:101207097 815.453