Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1132 ATGAGTACTGATCCCTACTCCATCAATGGCTCTTTGGGTTTATACCACTACTTCTCTTCTTCTTCTTCTTCCACCACTTCTAATTCTTTCTCTCCTTATGATCTCTTCTCCTTTTCTTTCTCCAATAATGATAATACTAATAACAATAATACCCTAAAAAGCCCATCTTCCTCTTTCACAACACCCCATGAATTCTTTTCTCCTCCTTGTTCCCCTCCTCAAGTTCTTCCCCTTTTAACTTTAAGCCCTGCAAGACATGATCATCAACAGCAAGAACAAGATCACCATTCATTTTCACAACACAACAATAAGAAGAAGATGATGATGAACTTGTGTCGCCCTTGTGAAGAAGAAGAAGAAGATGATGATGATACTGTTACTGTTGCTTTGCATTTAGGGCTTCCAACAGCTTCTAATTCTTCTTCTTCTTCATCTGACTTGATTTTGAGGCTTTCTTCAACTGAAATCTCAGATACAATGTTAGAAGAAGGTGATCATGTTTCTAATTATGGTGGTGGACTAAACAAGGGCCAGTATTGGATTCCAACTCCTGCTCAGATTCTCATTGGTCCAACTCAATTTTCTTGCCCTCTTTGCTTCAAGACCTTCAACAGATACAATAACATGCAGATGCATATGTGGGGGCATGGATCTCAATACAGAAAAGGGCCACAGTCACTAAGAGGAGCACAACCCACAGGCATGCTAAGGCTACCATGTTATTGCTGTGCACCAGGGTGCAGAAACAACATAGACCATCCAAGGTCAAAGCCACTAAAAGACTTCAGAACCCTTCAAACACATTACAAAAGAAAGCATGGAAACAAGCCATTTACATGTACTAAATGTGGGAAAGCCTTTGCTGTGAGAGGGGACTGGAGAACTCATGAGAAGAACTGTGGGAAGCTCTGGCATTGCACTTGTGGCTCTGATTTTAAGCACAAAAGGTCTCTCAAAGATCACATCAAAGCCTTTGGATATGGCCATGCACCTTGTGGGATTCACTCTTTTGATGAAGATGATGACCCAGCTTCTGAGATTGAACATGATAATGACTTTTCTCTCAGTAATGGAGATTCATAA 1083 40.72 MSTDPYSINGSLGLYHYFSSSSSSTTSNSFSPYDLFSFSFSNNDNTNNNNTLKSPSSSFTTPHEFFSPPCSPPQVLPLLTLSPARHDHQQQEQDHHSFSQHNNKKKMMMNLCRPCEEEEEDDDDTVTVALHLGLPTASNSSSSSSDLILRLSSTEISDTMLEEGDHVSNYGGGLNKGQYWIPTPAQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPQSLRGAQPTGMLRLPCYCCAPGCRNNIDHPRSKPLKDFRTLQTHYKRKHGNKPFTCTKCGKAFAVRGDWRTHEKNCGKLWHCTCGSDFKHKRSLKDHIKAFGYGHAPCGIHSFDEDDDPASEIEHDNDFSLSNGDS 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11349122 11352405 - Sed0010257.1 Sed05g1132 713758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1132 360 PANTHER ZINC FINGER PROTEIN WIP2 47 352 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(InterPro)|GO:0010468(PANTHER)|GO:0048856(PANTHER)
Sed05g1132 360 ProSiteProfiles Zinc finger C2H2 type domain profile. 278 305 IPR013087 -
Sed05g1132 360 FunFam Zinc finger protein WIP2 247 329 - -
Sed05g1132 360 Pfam Zinc finger, C2H2 type 194 213 IPR013087 -
Sed05g1132 360 ProSitePatterns Zinc finger C2H2 type domain signature. 196 216 IPR013087 -
Sed05g1132 360 MobiDBLite consensus disorder prediction 340 360 - -
Sed05g1132 360 SUPERFAMILY beta-beta-alpha zinc fingers 259 298 IPR036236 -
Sed05g1132 360 Gene3D Classic Zinc Finger 193 216 - -
Sed05g1132 360 ProSiteProfiles Zinc finger C2H2 type domain profile. 194 221 IPR013087 -
Sed05g1132 360 Gene3D Classic Zinc Finger 254 331 - -
Sed05g1132 360 SMART c2h2final6 278 298 IPR013087 -
Sed05g1132 360 SMART c2h2final6 194 216 IPR013087 -
Sed05g1132 360 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 277 301 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1195 Sed-Chr3:7546114 Sed05g1132 Sed-Chr5:11349122 7.70E-85 dispersed
Sed05g1132 Sed-Chr5:11349122 Sed12g1232 Sed-Chr12:8757416 4.80E-97 dispersed
Sed03g1891 Sed-Chr3:12862451 Sed05g1132 Sed-Chr5:11349122 3.00E-87 transposed
Sed14g0195 Sed-Chr14:2209686 Sed05g1132 Sed-Chr5:11349122 5.40E-100 transposed
Sed01g3304 Sed-Chr1:61376072 Sed05g1132 Sed-Chr5:11349122 5.60E-116 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38502 None None None None Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1132 - - - 0.0