Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1142 ATGGAGAATTTGGAGAAAGATTTGGAGGAGATGAGAGATTATTACAAAAGTGGTAAAACAAAGGAGCCATCTTGGAGGATTTCACAGCTTAAGGCCTTGCGCCAACTTCTAAGCCACAATGAACAACAAATTTACAGTGCTCTTATGCAAGACTTGGGAAAACACCATGTTGAAGCTTACAGAGATGAGATTGGTACTCTGGAAAAGTCCCTCAACTTTGCTCTTCAAAATTTGAAAAGTTGGATGTCACCCAAGAAGGGGAAATTGCCAGTAATAGCGTTGTTCAGTTCGGCCGAAGTGGTTCCACAGCCTCTGGGCGTTGTTCTTATAATTTCATCTTGGAACTTTCCATTTGGGTTGTCGTTGGAGCCGTTGATAGGAGCAATAGCAGCCGGAAATTGCGTGTTTTTGAAGACGTCGGAGTTTTCTCCGGTGAGTTCAGCCTTTCTTGCCAACACTGTTGGGAAATACGTTGATTGTAAAGCCGTGAGAGTCGTGGAAGGAGGGGCGGCGGCCGGCGAGCGGTTGCTGCAGCAACGCTGGGATAAGATTTTCTTTACAGGAAGTGGACGAGTGGGGCGGATTGTTATGGCGGCTGCCGCGAAACACCTTACGCCTGTGACTTTAGAGCTCGGTGGGAAATGCCCCGCCATTGTTGACTCCCTCTCGTTCTCATGGGACATTGAGGCAACCGCCAAACGGATCGTGATCGGAAAATTCGGACCATGCGCCGGTCAAGCTTGCATAGCTATCGATTATGTACTCATTGAACATAAATTTATACCTACCATGGTCGAATTGATGAAGAAGTTCATCAACGAATCCTTCGGCAATAGTTGTAAACAAGCAAAAAGCATAGCAAGAATCGGTAACAAACAAAATTTCTTGAGATTGAAGAATTTGGTGGAGGAACCTGCTGTTCGAGCTTCCATCATCTATGGAGGATCCATGGATGAAGACAAATTGTTTGTTGAGCCGACTATTCTGTTGAATCCACCAAACGATGCAGAAATGATGACAGAAGAAATATTTGGACCATTCCTTCCCATAATTGGAGTGGAGAAGATTGAAGACAGTATAGACTTCATAAATTCAAGGCCGAAGCCTCTAGCCATTTATGCGTTCACTAAAGATAAAGCTTTTCAAAGGCAATTGGTCTCACAAACATCTTCTGGCAGCTTGACATTTAATGATGCAGTTATTCAGTACGCAGCCGATTCACTCCCATTCGGTGGGGTTGGTGAAAGCGGGATTGGAAGGTACCATGGCAAATTCTCCTTCGACGCATTTAGCCATGAAAAGGCTGTTCTTAAGAGGAGCTTTTTCTCGGACTTCTGGTTCAGATATCCGCCATGGAACAATCACAAGCTTCAGCTCCTTAAAGATGCTTACAATTTCAACTATTTTCACTTGGCCCTCACCGTTTTGGGCCTTAATAATTACAACCAAATGTAA 1455 44.4 MENLEKDLEEMRDYYKSGKTKEPSWRISQLKALRQLLSHNEQQIYSALMQDLGKHHVEAYRDEIGTLEKSLNFALQNLKSWMSPKKGKLPVIALFSSAEVVPQPLGVVLIISSWNFPFGLSLEPLIGAIAAGNCVFLKTSEFSPVSSAFLANTVGKYVDCKAVRVVEGGAAAGERLLQQRWDKIFFTGSGRVGRIVMAAAAKHLTPVTLELGGKCPAIVDSLSFSWDIEATAKRIVIGKFGPCAGQACIAIDYVLIEHKFIPTMVELMKKFINESFGNSCKQAKSIARIGNKQNFLRLKNLVEEPAVRASIIYGGSMDEDKLFVEPTILLNPPNDAEMMTEEIFGPFLPIIGVEKIEDSIDFINSRPKPLAIYAFTKDKAFQRQLVSQTSSGSLTFNDAVIQYAADSLPFGGVGESGIGRYHGKFSFDAFSHEKAVLKRSFFSDFWFRYPPWNNHKLQLLKDAYNFNYFHLALTVLGLNNYNQM 484
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 11860219 11867524 - Sed0013233.1 Sed05g1142 713768
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1142 484 PIRSF ALDH 1 476 IPR012394 GO:0006081(InterPro)
Sed05g1142 484 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 12 434 IPR016162 GO:0016491(InterPro)
Sed05g1142 484 Pfam Aldehyde dehydrogenase family 5 436 IPR015590 GO:0016491(InterPro)
Sed05g1142 484 FunFam Aldehyde dehydrogenase 12 218 - -
Sed05g1142 484 SUPERFAMILY ALDH-like 8 454 IPR016161 GO:0016491(InterPro)
Sed05g1142 484 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 213 416 IPR016163 GO:0016620(InterPro)
Sed05g1142 484 FunFam Aldehyde dehydrogenase 213 416 - -
Sed05g1142 484 Coils Coil 57 77 - -
Sed05g1142 484 Coils Coil 1 21 - -
Sed05g1142 484 PANTHER ALDEHYDE DEHYDROGENASE 2 477 IPR012394 GO:0004029(PANTHER)|GO:0005737(PANTHER)|GO:0006081(InterPro)|GO:0006081(PANTHER)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1142 Sed-Chr5:11860219 Sed05g2367 Sed-Chr5:36139360 8.30E-129 dispersed
Sed05g1142 Sed-Chr5:11860219 Sed05g1143 Sed-Chr5:11860219 1.60E-201 tandem
Sed06g1004 Sed-Chr6:14802316 Sed05g1142 Sed-Chr5:11860219 1.80E-131 transposed
Sed07g1685 Sed-Chr7:15029591 Sed05g1142 Sed-Chr5:11860219 1.30E-158 transposed
Sed01g3300 Sed-Chr1:61338658 Sed05g1142 Sed-Chr5:11860219 1.20E-239 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1142 K00128 - csv:101205263 785.793