Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1143 ATGGAGAATTTGGAGAAAGATTTGGAGGAGATGAGAGATTATTACAAAAGTGGTAAAACAAAGGAGCCATCTTGGAGGATTTCACAGCTTAAGGCCTTGCGCCAACTTCTAAGCCACAATGAACAACAAATTTACAGTGCTCTTATGCAAGACTTGGGAAAACACCATGTTGAAGCTTACAGAGATGAGATTGGTACTCTGGAAAAGTCCCTCAACTTTGCTCTTCAAAATTTGAAAAGTTGGATGTCACCCAAGAAGGGGAAATTGCCAGTAATAGCGTTGTTCAGTTCGGCCGAAGTGGTTCCACAGCCTCTGGGCGTTGTTCTTATAATTTCATCTTGGAACTTTCCATTTGGGTTGTCGTTGGAGCCGTTGATAGGAGCAATAGCAGCCGGAAATTGCGTGTTTTTGAAGACGTCGGAGTTTTCTCCGGTGAGTTCAGCCTTTCTTGCCAACACTGTTGGGAAATACGTTGATTGTAAAGCCGTGAGAGTCGTGGAAGGAGGGGCGGCGGCCGGCGAGCGGTTGCTGCAGCAACGCTGGGATAAGATTTTCTTTACAGGAAGTGGACGAGTGGGGCGGATTGTTATGGCGGCTGCCGCGAAACACCTTACGCCTGTGACTTTAGAGCTCGGTGGGAAATGCCCCGCCATTGTTGACTCCCTCTCGTTCTCATGGGACATTGAGGCAACCGCCAAACGGATCGTGATCGGAAAATTCGGACCATGCGCCGGTCAAGCTTGCATAGCTATCGATTATGTACTCATTGAACATAAATTTATACCTACCATGGTCGAATTGATGAAGAAGTTCATCAACGAATCCTTCGGCAATAGTTGTAAACAAGCAAAAAGCATAGCAAGAATCGGTAACAAACAAAATTTCTTGAGATTGAAGAATTTGGTGGAGGAACCTGCTGTTCGAGCTTCCATCATCTATGGAGGATCCATGGATGAAGACAAATTGTTTGTTGAGCCGACTATTCTGTTGAATCCACCAAACGATGCAGAAATGATGACAGAAGAAATATTTGGACCATTCCTTCCCATAATTGGAGTTAGTTAA 1065 44.98 MENLEKDLEEMRDYYKSGKTKEPSWRISQLKALRQLLSHNEQQIYSALMQDLGKHHVEAYRDEIGTLEKSLNFALQNLKSWMSPKKGKLPVIALFSSAEVVPQPLGVVLIISSWNFPFGLSLEPLIGAIAAGNCVFLKTSEFSPVSSAFLANTVGKYVDCKAVRVVEGGAAAGERLLQQRWDKIFFTGSGRVGRIVMAAAAKHLTPVTLELGGKCPAIVDSLSFSWDIEATAKRIVIGKFGPCAGQACIAIDYVLIEHKFIPTMVELMKKFINESFGNSCKQAKSIARIGNKQNFLRLKNLVEEPAVRASIIYGGSMDEDKLFVEPTILLNPPNDAEMMTEEIFGPFLPIIGVS 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11860219 11867524 - Sed0013233.2 Sed05g1143 713769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1143 354 SUPERFAMILY ALDH-like 8 353 IPR016161 GO:0016491(InterPro)
Sed05g1143 354 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 12 212 IPR016162 GO:0016491(InterPro)
Sed05g1143 354 Pfam Aldehyde dehydrogenase family 5 353 IPR015590 GO:0016491(InterPro)
Sed05g1143 354 Coils Coil 57 77 - -
Sed05g1143 354 Coils Coil 1 21 - -
Sed05g1143 354 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 213 353 IPR016163 GO:0016620(InterPro)
Sed05g1143 354 PANTHER ALDEHYDE DEHYDROGENASE 2 353 IPR012394 GO:0004029(PANTHER)|GO:0005737(PANTHER)|GO:0006081(InterPro)|GO:0006081(PANTHER)
Sed05g1143 354 FunFam Aldehyde dehydrogenase 12 218 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g3300 Sed-Chr1:61338658 Sed05g1143 Sed-Chr5:11860219 1.50E-170 dispersed
Sed01g3301 Sed-Chr1:61338658 Sed05g1143 Sed-Chr5:11860219 5.30E-171 dispersed
Sed05g1143 Sed-Chr5:11860219 Sed07g1685 Sed-Chr7:15029591 7.00E-109 dispersed
Sed05g1142 Sed-Chr5:11860219 Sed05g1143 Sed-Chr5:11860219 1.60E-201 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1143 K00128 - csv:101205263 557.37