Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1198 ATGAAATCTTACTTCCCAACGAGATTGGTAATATTCTTTCTTGTAACTTTAGCCACCATCTCGGCATCGTCGCCATCCATTCCATCGGACAAGTCAGAACTAAACAAATGGTTTTCGGAGAATGTGAAACCGTACGCCGATCGCACTACAAAGCTCGATAAAGAGTTGGTGGAGGCAGAAAAGAGCACCTTCGTAGTTAAAGTAAAGGCGGACGGAAGCGGCGATTTCAAGACGGTGACCGAAGCCATCAACAGTGTTCCAGCTAAAAACACAAAACGCGTAATAATATGGATTGGAGGAGGAGTTTATAAAGAGAAGCTTCAGATCGATAGAAATAAGCCATTTGTTACTCTTTATGGATCTCCCAATGATATGCCAACTTTGACTTTTAATGGCAATGCCAAAACGTACGGTACTGTTTACAGTGCCACTTTGATCGTCGAATCGAATTATTTTGTTGCTGCCAATCTCATCATTGAGAATTCATCCCCAAGGCCAACCTTGAAAGAAGGAGAGCAGGCATTAGCAGCAAGATTTATGGGAAACAAAGCCGCGTTTTACAAATGCAAATTCATAGGGTTCCAAGATACCCTTTGCGACGATGCCGGTTATCACCTCTACAAGGATTGCTTCATTCAAGGCACTGTAGACTTCATTTTTGGAAGAGGAACCTCCCTTTATTTGAACTCCCACTTGGATGTGGTGAAAGATGGTTCAGTGATCACAGCGCATTCGAGAGAGCTCGAATCTGATGACAGCGGCTACTCATTTGTGCATTGTAGCATTACAGGAACTACGGGTGGCTCAAAAACTTATTTGGGAAGAGCTTGGAGGCCTTGGTCTAGGGTTATCTTTTCCTATACTGAAATGGCTGACATTATTCAGCCTGAAGGCTGGCACGACATGGATCATCCTGAATATAACTCTACGATTTTATTCGGAGAGCACAAGTGTTGGGGACCGGGATCGGAGACGAGTAAGCGTATATTCTTCGGCAAGCAGTTGAGTGACGCAGAAGTGAAGCCATTCCTTAGCCTTAGTTACATAAAGGCTGACGAGTGGTTGCTTCCTCCTCCCAAACTTCAGTCTTAG 1092 44.14 MKSYFPTRLVIFFLVTLATISASSPSIPSDKSELNKWFSENVKPYADRTTKLDKELVEAEKSTFVVKVKADGSGDFKTVTEAINSVPAKNTKRVIIWIGGGVYKEKLQIDRNKPFVTLYGSPNDMPTLTFNGNAKTYGTVYSATLIVESNYFVAANLIIENSSPRPTLKEGEQALAARFMGNKAAFYKCKFIGFQDTLCDDAGYHLYKDCFIQGTVDFIFGRGTSLYLNSHLDVVKDGSVITAHSRELESDDSGYSFVHCSITGTTGGSKTYLGRAWRPWSRVIFSYTEMADIIQPEGWHDMDHPEYNSTILFGEHKCWGPGSETSKRIFFGKQLSDAEVKPFLSLSYIKADEWLLPPPKLQS 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18662566 18663989 + Sed0007539.1 Sed05g1198 713824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1198 363 ProSitePatterns Pectinesterase signature 2. 212 221 IPR033131 -
Sed05g1198 363 SUPERFAMILY Pectin lyase-like 63 355 IPR011050 -
Sed05g1198 363 Gene3D - 60 358 IPR012334 -
Sed05g1198 363 FunFam Pectinesterase 61 357 - -
Sed05g1198 363 Pfam Pectinesterase 66 351 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Sed05g1198 363 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 26 355 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1277 Sed-Chr4:26828504 Sed05g1198 Sed-Chr5:18662566 6.30E-150 dispersed
Sed04g1278 Sed-Chr4:26862333 Sed05g1198 Sed-Chr5:18662566 6.30E-150 dispersed
Sed04g3582 Sed-Chr4:45150487 Sed05g1198 Sed-Chr5:18662566 1.10E-141 dispersed
Sed05g1198 Sed-Chr5:18662566 Sed07g0589 Sed-Chr7:4460161 2.20E-70 dispersed
Sed08g0947 Sed-Chr8:8322366 Sed05g1198 Sed-Chr5:18662566 4.70E-98 transposed
Sed12g1681 Sed-Chr12:28013600 Sed05g1198 Sed-Chr5:18662566 2.70E-52 transposed
Sed01g3234 Sed-Chr1:59766179 Sed05g1198 Sed-Chr5:18662566 4.00E-148 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1198 K01051 - csv:101205095 486.108