Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1209 ATGAGGGCGTTGCAATTGCAGCTTAGAGTTGACGCCAATCTCGTAAATCCAAACACTCATTTCGTTCCTGTTTCTTCTCTAAACCCCTCGCTATTGATTGGTTTTCAAGCTACAAAATACCCCCATCTCCAAAACCTGAAGCCTCGTCGAAATTGCAGTCGAACCCATTTGTGTGCTCCATCCACATCTTTCATCAAAGCTTCCATGGCCGATTCCGCAAGCTCAGCGACAGAGACAAAGCCATTCTCTGTGCTGTTTGTGTGCTTGGGCAACATCTGCCGAAGCCCAGCTGCTGAAGGAGTTTTCAGGGACCTGGTGGGGAAGAAGGGCCTTCATTCCAATTTCATAATCGACTCTGCTGGCACCATTGGTTATCATGAGGGTAATGAGGCCGACCCAAGAATGAGGGCAGCCTCTAAACGACGTGGGATCGCAATTACATCCTTATCGAGGCCAATTAAACCTTCTGATTTTGTAAATTTTGATCTTATTCTTGCCATGGACAAGAAAAACAGAGGTAGGAGAAGAGAATACTATGGCAATTGCAACCATACAATGTTAACTTAA 567 45.5 MRALQLQLRVDANLVNPNTHFVPVSSLNPSLLIGFQATKYPHLQNLKPRRNCSRTHLCAPSTSFIKASMADSASSATETKPFSVLFVCLGNICRSPAAEGVFRDLVGKKGLHSNFIIDSAGTIGYHEGNEADPRMRAASKRRGIAITSLSRPIKPSDFVNFDLILAMDKKNRGRRREYYGNCNHTMLT 188
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19738276 19740837 - Sed0010741.2 Sed05g1209 713835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1209 188 CDD LMWPTP 83 172 - -
Sed05g1209 188 Gene3D - 65 187 - -
Sed05g1209 188 PRINTS LMW phosphotyrosine protein phosphatase signature 127 143 IPR017867 GO:0004725(InterPro)|GO:0006470(InterPro)
Sed05g1209 188 PRINTS LMW phosphotyrosine protein phosphatase signature 160 175 IPR017867 GO:0004725(InterPro)|GO:0006470(InterPro)
Sed05g1209 188 PRINTS LMW phosphotyrosine protein phosphatase signature 84 101 IPR017867 GO:0004725(InterPro)|GO:0006470(InterPro)
Sed05g1209 188 SMART LMWPc_2 82 181 IPR023485 -
Sed05g1209 188 Pfam Low molecular weight phosphotyrosine protein phosphatase 84 181 IPR023485 -
Sed05g1209 188 SUPERFAMILY Phosphotyrosine protein phosphatases I 80 181 IPR036196 -
Sed05g1209 188 PANTHER LOW MOLECULAR WEIGHT PHOSPHOTYROSINE PROTEIN PHOSPHATASE-RELATED 63 173 IPR052995 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1208 Sed-Chr5:19738276 Sed05g1209 Sed-Chr5:19738276 3.10E-95 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1209 K25307 - csv:101207515 248.825