Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed05g1210 | ATGGAGAGCTGCCCCGACGACATCGCCGACGACCTCCAGAGCTTGAGCTTCAACTCCACCAACACCAACCGCAGCACCAGCTCCGGCTCCGAGACTACTCTCACCGCCTCCTCCTCTTCCCTCGCTCTCAACCACCGGATCCGACCCGAATCATCCTCCACTCCCCAACTCTCCTTCTCCGACCTCAACTTCTCCCACCGTATCGGCTCTGGCGACATTGGCTCCGTCTACCTCGCCGCCCTCAAGTCCGATGGACGCCTCTTCGCGGCCAAGGTCATGGACAAGAAGGAACTCGCCACTCGGAGCAAAGAAGGCAGAGCCAGGACTGAGAGGGACATTTTGGAGTCCTTGGACCATCCCTTTCTTCCCACCCTCTGCGCCAGTATCGAATCGCCCAAGTGGCTCTGTCTCTTGACAGAGTTCTGTCCCGGCGGCGATCTCCATGTTCTCCGCCAGCGCCAGCCTAACAAGCGCTTCGATGAACTCGCCGTCAGATTCTATGCATCTGAGATAGTAGTTGCTATCGAGTACCTTCACATGATGGGGATCATTTACCGTGATTTGAAGCCGGAAAATGTGCTGGTACGGTCGGACGGCCATATCATGCTCACTGATTTTGATCTCTCCTTGAAGTGTGAGGATTCAACGGCGACCCCACAGGTTATTACTGCTAAAAATTCAACAAATGGAACCGCTCCACCAAAGGACTACCAAATTGATGCTCCTCCTTTCACATCATCCTCTTGTATACTTCCAAACTGCATTGTCCCTGCCGTGTCATGTTTCAACCCAAAACGCAAGCGCAAGAAGAAGTCCGGTCACCGTAATGGACCCCAGTTTGTTGCTGAGCCGATGGACGTCCGGTCCATGTCGTTTGTTGGCACCCACGAGTACTTGGCCCCAGAGATTGTCTCTGGAGAGGGCCATGGAAGTGCAGTGGACTGGTGGACTCTTGGAGTGTTTGTGTATGAGTTGTTTTATGGAGTGACACCCTTTAGAGGCATGGACAATGAGCTCACCTTGGCCAACATAGTGGCCAGAGCCCTCGAGTTCCCCAAAGAACCAGCAGTGCCGGCAGCAGCAAAGGATCTGATCTCACAGTTACTGGTCAAAGATCCAGCTAGGCGACTCGGGTCAACAACAGGATCATCAGCGATCAAGCACCATTCATTTTTCCAAGGAATACACTGGGCATTATTGAGATGTACGACTCCACCATTTATTCCTCCACCATATAGTAGAGAAATTGCATCGGATGAAAGCTGCCCAGAAGCCCCAGTGGACTATTATTAG | 1293 | 52.9 | MESCPDDIADDLQSLSFNSTNTNRSTSSGSETTLTASSSSLALNHRIRPESSSTPQLSFSDLNFSHRIGSGDIGSVYLAALKSDGRLFAAKVMDKKELATRSKEGRARTERDILESLDHPFLPTLCASIESPKWLCLLTEFCPGGDLHVLRQRQPNKRFDELAVRFYASEIVVAIEYLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKCEDSTATPQVITAKNSTNGTAPPKDYQIDAPPFTSSSCILPNCIVPAVSCFNPKRKRKKKSGHRNGPQFVAEPMDVRSMSFVGTHEYLAPEIVSGEGHGSAVDWWTLGVFVYELFYGVTPFRGMDNELTLANIVARALEFPKEPAVPAAAKDLISQLLVKDPARRLGSTTGSSAIKHHSFFQGIHWALLRCTTPPFIPPPYSREIASDESCPEAPVDYY | 430 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 19794145 | 19799540 | + | Sed0004746.1 | Sed05g1210 | 713836 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed05g1210 | 430 | ProSiteProfiles | Protein kinase domain profile. | 62 | 392 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed05g1210 | 430 | FunFam | serine/threonine-protein kinase D6PK-like | 287 | 410 | - | - | |
Sed05g1210 | 430 | Gene3D | Phosphorylase Kinase; domain 1 | 61 | 145 | - | - | |
Sed05g1210 | 430 | SUPERFAMILY | Protein kinase-like (PK-like) | 39 | 418 | IPR011009 | - | |
Sed05g1210 | 430 | FunFam | serine/threonine-protein kinase D6PK-like | 146 | 213 | - | - | |
Sed05g1210 | 430 | Pfam | Protein kinase domain | 289 | 392 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed05g1210 | 430 | Pfam | Protein kinase domain | 64 | 223 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed05g1210 | 430 | PANTHER | FLIPPASE KINASE 1-RELATED | 26 | 411 | - | GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER) | |
Sed05g1210 | 430 | PIRSF | ILK | 274 | 378 | - | - | |
Sed05g1210 | 430 | PIRSF | ILK | 13 | 239 | - | - | |
Sed05g1210 | 430 | SMART | serkin_6 | 62 | 392 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed05g1210 | 430 | MobiDBLite | consensus disorder prediction | 12 | 35 | - | - | |
Sed05g1210 | 430 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - | |
Sed05g1210 | 430 | Gene3D | Transferase(Phosphotransferase) domain 1 | 146 | 221 | - | - | |
Sed05g1210 | 430 | Gene3D | Transferase(Phosphotransferase) domain 1 | 286 | 410 | - | - | |
Sed05g1210 | 430 | CDD | STKc_phototropin_like | 68 | 411 | - | - | |
Sed05g1210 | 430 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 183 | 195 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed05g1210 | Sed-Chr5:19794145 | Sed14g1270 | Sed-Chr14:21747693 | 1.20E-107 | dispersed | |
Sed01g3168 | Sed-Chr1:56994948 | Sed05g1210 | Sed-Chr5:19794145 | 3.80E-108 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
79153 | PF00069 | Pkinase | 3.10E-37 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed05g1210 | K08286 | - | csv:101207262 | 741.11 |