Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1210 ATGGAGAGCTGCCCCGACGACATCGCCGACGACCTCCAGAGCTTGAGCTTCAACTCCACCAACACCAACCGCAGCACCAGCTCCGGCTCCGAGACTACTCTCACCGCCTCCTCCTCTTCCCTCGCTCTCAACCACCGGATCCGACCCGAATCATCCTCCACTCCCCAACTCTCCTTCTCCGACCTCAACTTCTCCCACCGTATCGGCTCTGGCGACATTGGCTCCGTCTACCTCGCCGCCCTCAAGTCCGATGGACGCCTCTTCGCGGCCAAGGTCATGGACAAGAAGGAACTCGCCACTCGGAGCAAAGAAGGCAGAGCCAGGACTGAGAGGGACATTTTGGAGTCCTTGGACCATCCCTTTCTTCCCACCCTCTGCGCCAGTATCGAATCGCCCAAGTGGCTCTGTCTCTTGACAGAGTTCTGTCCCGGCGGCGATCTCCATGTTCTCCGCCAGCGCCAGCCTAACAAGCGCTTCGATGAACTCGCCGTCAGATTCTATGCATCTGAGATAGTAGTTGCTATCGAGTACCTTCACATGATGGGGATCATTTACCGTGATTTGAAGCCGGAAAATGTGCTGGTACGGTCGGACGGCCATATCATGCTCACTGATTTTGATCTCTCCTTGAAGTGTGAGGATTCAACGGCGACCCCACAGGTTATTACTGCTAAAAATTCAACAAATGGAACCGCTCCACCAAAGGACTACCAAATTGATGCTCCTCCTTTCACATCATCCTCTTGTATACTTCCAAACTGCATTGTCCCTGCCGTGTCATGTTTCAACCCAAAACGCAAGCGCAAGAAGAAGTCCGGTCACCGTAATGGACCCCAGTTTGTTGCTGAGCCGATGGACGTCCGGTCCATGTCGTTTGTTGGCACCCACGAGTACTTGGCCCCAGAGATTGTCTCTGGAGAGGGCCATGGAAGTGCAGTGGACTGGTGGACTCTTGGAGTGTTTGTGTATGAGTTGTTTTATGGAGTGACACCCTTTAGAGGCATGGACAATGAGCTCACCTTGGCCAACATAGTGGCCAGAGCCCTCGAGTTCCCCAAAGAACCAGCAGTGCCGGCAGCAGCAAAGGATCTGATCTCACAGTTACTGGTCAAAGATCCAGCTAGGCGACTCGGGTCAACAACAGGATCATCAGCGATCAAGCACCATTCATTTTTCCAAGGAATACACTGGGCATTATTGAGATGTACGACTCCACCATTTATTCCTCCACCATATAGTAGAGAAATTGCATCGGATGAAAGCTGCCCAGAAGCCCCAGTGGACTATTATTAG 1293 52.9 MESCPDDIADDLQSLSFNSTNTNRSTSSGSETTLTASSSSLALNHRIRPESSSTPQLSFSDLNFSHRIGSGDIGSVYLAALKSDGRLFAAKVMDKKELATRSKEGRARTERDILESLDHPFLPTLCASIESPKWLCLLTEFCPGGDLHVLRQRQPNKRFDELAVRFYASEIVVAIEYLHMMGIIYRDLKPENVLVRSDGHIMLTDFDLSLKCEDSTATPQVITAKNSTNGTAPPKDYQIDAPPFTSSSCILPNCIVPAVSCFNPKRKRKKKSGHRNGPQFVAEPMDVRSMSFVGTHEYLAPEIVSGEGHGSAVDWWTLGVFVYELFYGVTPFRGMDNELTLANIVARALEFPKEPAVPAAAKDLISQLLVKDPARRLGSTTGSSAIKHHSFFQGIHWALLRCTTPPFIPPPYSREIASDESCPEAPVDYY 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19794145 19799540 + Sed0004746.1 Sed05g1210 713836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1210 430 ProSiteProfiles Protein kinase domain profile. 62 392 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g1210 430 FunFam serine/threonine-protein kinase D6PK-like 287 410 - -
Sed05g1210 430 Gene3D Phosphorylase Kinase; domain 1 61 145 - -
Sed05g1210 430 SUPERFAMILY Protein kinase-like (PK-like) 39 418 IPR011009 -
Sed05g1210 430 FunFam serine/threonine-protein kinase D6PK-like 146 213 - -
Sed05g1210 430 Pfam Protein kinase domain 289 392 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g1210 430 Pfam Protein kinase domain 64 223 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g1210 430 PANTHER FLIPPASE KINASE 1-RELATED 26 411 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Sed05g1210 430 PIRSF ILK 274 378 - -
Sed05g1210 430 PIRSF ILK 13 239 - -
Sed05g1210 430 SMART serkin_6 62 392 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g1210 430 MobiDBLite consensus disorder prediction 12 35 - -
Sed05g1210 430 MobiDBLite consensus disorder prediction 1 35 - -
Sed05g1210 430 Gene3D Transferase(Phosphotransferase) domain 1 146 221 - -
Sed05g1210 430 Gene3D Transferase(Phosphotransferase) domain 1 286 410 - -
Sed05g1210 430 CDD STKc_phototropin_like 68 411 - -
Sed05g1210 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 183 195 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1210 Sed-Chr5:19794145 Sed14g1270 Sed-Chr14:21747693 1.20E-107 dispersed
Sed01g3168 Sed-Chr1:56994948 Sed05g1210 Sed-Chr5:19794145 3.80E-108 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79153 PF00069 Pkinase 3.10E-37 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1210 K08286 - csv:101207262 741.11