Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1213 ATGAGCGGCGACAGTCGAAGGCGAGGCCGCGTAGACACAAGTAGGTCAAAGAAGCAGAGGATAATCCGGTCCGCCGAGGAGGAGATCGAATCCAAGCTTGGCTTTGATCTCTTCTCCGAAGGTGATACCAGGCTTGGATGGCTCCTCACTTTCGCTCCTTCATCTTTGGAGGATCAAGATACCGGAAGGGTCTATAGCTGCATTGACCTTTATTTTGTGGCACAGGATGGGAGCAGTTTCAAGTTAAAATATAAGTTCCGTCCTTATTTCTATGCAGCCACAAAGGATAAAATGGAGACTGATGTGGAGGCTTATTTGAGACGACGATATGAAAGTCAAATAGCTGACATTGAGATTTTAGAAAAAGAAGATCTTGATCTTAAGAATCACCTGTCAGGCTTGCGCAAGGCATATCTAAAGCTATCGTTTGACACTGTTCAAGAGTTGATGAATGTGAAGCGAGAACTTTTGCATGTTGTGGAAAGCAATTGGGCAAAATCTGATGCTGCAGAAGCATATGATTCTATTTTATTTGGGAAAAGAGAACAAAAGCCTCAAGATTTTTTAGAATGCATTGTTGATCTTCGAGAATATGATGTTCCATACCATGTTCGCTTTGCTATTGATCATGATTTGCGCTGCGGACAATGGTATGATGTTAGTGTATCGAGCACTTGTGCTGCACTTGAGAAGAGAAAAGATCTTCTGCAACGTGCTGAAGTTCACGTATGTGCATTTGATATTGAGACTACAAAGCTACCTTTAAAATTTCCAGATGCTGAATATGACATGATAATGATGATTTCCTATATGGTTGATGGACAAGGGTACTTGATTATCAACAGAGAGGGTGTATTTGGATTTGGTAGAAAAGAGGGAGTGGAAGGGCTAATGGTGGTTGAGTGTGTTGGAGAAGATATTGAGAATTTGGAGTACACTCCAAAACCAGAATATGAAGGGTTCTTTAAAGTTACCAACGTGAAAAATGAGTTAGAGCTTCTCCAACTGTGGTTTGGCCATATGCGAGAGGTGAAACCTGGTATCTATGTCACATACAATGGTGATTATTTTGACTGGCCATTCATTGAAAGCAGAGCAGCCCATCATGGATTGAAAATGAGCGATGAAGTAGGATTTCAATGCGACAAGAATCAGGGAGAATGCCGTTCAAAATTTGCTTGTCATTTGGATTGCTTTGCCTGGGTAAAGCGTGATAGTTATCTTCCTCAGGGTAGCCAGGGTTTGAAGGCTGTCACAAAAGCTAAATTGGGTTATGATCCTCTTGAAGTGAATCCCGAGGATATGGTGCGGCTTGCAAAGGAAAAGCCTCAGATGATGGCTTCATATTCGGTTTCAGATGCTGTTGCTACGTACTACTTGTACATGACCTATGTTCATCCTTTTATTTTTTCTTTAGCAACTATCATTCCAATGTCACCTGATGAGGTGTTGCGCAAGGGAAGTGGGACCCTTTGTGAAATGCTTCTAATGGTTCAGGCTTACAAGGCAACTGTTGTGTGTCCTAACAAACACCAATCAGATCCAGAAAAGTTCTATAACAACCGCCTTCTTGAAAGTGAGACATATATTGGGGGTCATGTAGAATGTCTAGAGAGTGGTGTATTTAGATCCGACATTCCTACCAGTTTTAGGCTTGATCCATCTGCCTATGATCAATTGATACACAATCTGGATCGAGATCTGCAGTATGCCATACAAGTAGAAGGAAAGATGGACTTGGAGTTGGTGTTAAATTATTGCGATGTGAAGAATGCTATCATGGAAAAGCTTATCAGATTGCGGGATGAGCCTGTACGTGAAGAGGGCCCTCTGATATATCACCTTGATGTAGCTGCTATGTATCCGAACATTATTTTAACCAATAGACTTCAGCCGACATCAATAGTTACAGATGAGGTTTGTACTGCTTGCGACTTCAATCGTCCTGGGAAAACTTGTCTACGAAAACTTGAATGGGTTTGGCGTGGAGAGGTATTCATGGCTAAAAAAAGTGACTATTATCATTTGAAGAAGCAAATTGAATCTGAGTTTGTTGATGGCGGTAATGTTCGGTTGTCAAAATCATTTCTTGAACTACCAAAGCTGGAGCAACAAGCAAAGCTTAAAGAACGGTTGAAGAAATACTGTCAGAAGGCCTATAAACGTGTCCTTGATAAGCCAGTCAATGAAGTTCGAGAAGCAGGGATTTGCATGAGAGAAAACTCTTTCTATATTGACACTGTCCGTAGTTTTCGAGATAGACGATACGAATACAAAGGGCTCAATAAAGTATGGAAGGGGAAATTATCAGAAGCTAAAGCAAGTGGGAATTCAATCAAGATCCAGGAAGCCCAAGACATGGTAGTTCTTTATGATTCTCTACAACTTGCTCATAAATGTATCCTCAACTCTTTTTATGGATATGTGATGCGCAAGGGTGCTCGATGGTATTCGATGGAAATGGCTGGGGTAGTTACGTATACCGGAGCAAAAATCATTCAGAATGCTCGTCTGTTAATTGAGAAAATTGGAAAACCATTGGAGTTAGATACCGATGGTATCTGGTGTGCACTACCTGGATCATTCCCAGAGAACTTTACTTTCAAAACGAAAGATTCGAAGAAGTTGACCATTTCATATCCATGTGTTATGCTCAATGTTGATGTGGCAAGGAACAATACAAATGACCAATACCAGACGCTTATAGATCCTGTGAAGAAAATATATAAAACACACAGTGAATGCTCAATTGAATTTGAAGTAGATGGACCATACAAGGCAATGATTCTTCCTGCTTCCAAGGAAGAGGGCATTTTGATCAAGAAGAGATATGCGGTCTTCAATGATGATGGAACCCTTGCGGAGCTTAAAGGCTTTGAGATTAAGCGTAGGGGGGAGTTAAAGCTCATCAAAGTTTTCCAGGCTGAACTTTTTGACAAGTTTCTTCACGGTTCCACCTTAGAAGAATGCTATTCAGTAGTTGCATCTGTTGCAAATCGCTGGCTCGATCTTCTAGATAATCAAGGAAAAGATATTGCAGATAGCGAGTTGCTTGATTATATATCTGAATCCAGTACCATGAGCAAATCTTTGGCAGACTATGGAGAGCAGAAGTCTTGTGCTGTTACCACTGCAAGACGTCTTGCAGATTTTCTTGGTGATACAATGGTCAGGGATAAAGGCCTACGTTGTCAATATATAGTTGCATGTGAACCTAAGGGAACACCTGTAAGTGAGCGTGCTGTACCAGTTGCTATATTTGAGACTGATGCAGAGATTATGAAATTTTATGTACGGAAATGGTGCAAGATTTCATCTGAAGTTGGCATCCGATCCATCATTGACTGGTCCTACTACAAGCAACGTCTTAGCTCATCCATTCAAAAAATTATAACAATTCCAGCAGCCATGCAAAAGGTTGCAAATCCTGTTCCTAGGGTAGTCCATCCCGATTGGTTACATAAGAAAGTTCGTGAGAAGGATGATAAATTTCGCCAACAAAAAGTAGCTGACATGTTTGCATCCTCTAACAGAGGTAAAGATTCAAAGAAGAATAGTGATGTCAGTGACATAAACCATGTTATGAATGAAGATAATCCTGATGACTTGGAAGATTTTCAAAAGAAAACAAGTTCTACAAATGGCCCCAAACCAGTTGCTCGATGTTATGATGTCAGAGGCATGAAACATTCAGTTATCAGTGATAACGAAATAAACTCCAAGCTGCAGCAGAATTTTCATGATGGAGGATGTGAGCCTTCTTCACCCTTGCATGTTGAAAACATTGACAAAAATATTGATTACACTGGATGGCTTGAAATGAAGAAGCGAAAGTGGAAGAATACTTTGGACAAGAGGAAGAAGCAAAGGTTAGTAAGTTTAAGGACTCCGCATGCTGCTAATGATGCTACACGGGAGTTAAATGGTGCTATGAATAATAAAGTGCCTCCTAGAACTGGTGTTGGGTCATATTTTAAGAGGCATGAAGGATCTATAACACGCTGCCATTGGCAGATTTTACAGCTTGTTCATAGTTCACAGAGTGGCCAATATTTTGCTTGGGCTGTTGTAGAAGGAGTTATGCTAAAGATTCCTATTATTATTCCTAGAGTGTTTTACCTTAATTCTAAAGTACCCATTACAGATGAATTTGTGGGTAGGCGTGTTAACAAAACTCTTCCCCACGGAAGGCACAACCATAACCTGTATGAGGTCGTGACTGATGAAAGTCAATTTAGGGCCCAGAAGAATAAACTTGCAGCTCTCCTTGCTGATCCAGAAGTAGAGGGAATCTATGAAAGTAAGGTACCATTGCAGTTCAAGTCCCTCTTTCAGATTGGTTGTGTCTGTAAAGTTGATAAAACTGCTAAAAAACGAAGCATTCAAAATGGATGGAGTCTGGACGAACTGCAAATGAAAACTACAACAGAATGTAGTTACCTGGAAAAGCCTATCTCTTTCTTCTATGTGTATCACAGCAATTCTGAAGGAAGAGCTATCTATATTACATTTTTCCCCTCTACAAAATCAATACTTGTGGTGGTGGTTAGTCCTTACCAGAACAAAGACTTGTCATCAACTTTTCTTGAAAGGCAACATCGTGAAGCTTCCGAAATACTGTTTGGTGAATCACAACCTCTTAAGAGTGGTATAACTTACAAGCTTGACTATGTTGTTAACGTCAAAGAAGCAGAAGTGATTTTGCAAAGATCGATATCGGAACACAGGAGCATAAACCATGGACCTACTGTAGCTGTAATTCAATGCCCAAATGTGCAACTTCTGAAGTCAGGTGTTAGAGCATTAGAAGATTTTCCATGCGTGAGCATTCCTTCTAATGCTCGTGATAGCCAATATCAGGTTCTTGGTTGGCAACAAACAGCTGCAAAGATTGGAATGCAACGTTGTGCTGCATCATCCCAATGGTTGAATGAGAGAATCTCTCTTGCTAGATATGCCCATGTACCATTAGGAAATTTTGAACTTGATTGGCTAATTTTTACAGCTGATATATTCTTCTCAAGAGCATTACATGATCAACAGCAGGTACTATGGATATCAGATGATGGTGTTCCAGATATAGGAGGCATTAACATGGAAGATGTGTGTTTTTCGGATGAGGTCCAGCAACGTTTTCTGACGTACCCGGGAGCATATAGAAAAGTTTCTGTGGAGCTGAAGATCCATCATTTGTCTGTCAATGCTCTGCTGAAGAGCAACCAAGTAAATGAAATGGAAGGAGGTAGTTTGTTTGGCTTTGAACGTGATATGCAATGTGGGGCCCAAGTTTCTGTTGAAGAAGGTGGTTTTGATGAGGCTTCATCTTCTGCGCCGGCATTTCGTGTTCTGAAACAATTGATACAAAGGTGTCTTGCTGATGCAGTTACATCTGGAAATGTATATGCTGATGCAATTTTGCAGCATCTGTACCGATGGATTTGCAGCCCCCAATCAAGACTTCATGACCCAGCTCTTCATCGCTTGCTTCACAAAGTTATGCAAAAGGTGTTTGCTCTTTTGTTGGCTGAACTACGAAAATTAGGTGCCACCATTATATTTGCAAACTTCTCAAAAATTATTATAGACACGGGAAAGTTTGATCTCTCTGCCGCTAAAGCATACTGTGATAGCTTGCTGAAAACAGTGCAAACGAGGGATCTGTTTGAGTGGATTGAGCTGGAACCGTTGCAGTTCTGGCACTCGCTGTTGTTTATGAATCAGTATAACTATGGTGGAATCCCAGCAAAAAATGATGAGAGCACAGATACTGAATCTCAAGTTGATATAGTGGCCAACTGGAACATTGCTGAATATTTACCCCAGAAGATTCAGGATCACTTCGTTTTTATCATCTCTCAATTTTTGTATATTCCATGGAATTATGCAACCAAGGAAGCTGCAGCAAGAGTGTCATTGCAGCATGGTGACACATGTACTCCATCTATTTCAGTTGTAGCTGCTGAATCATTTGAATATCGTGTGACTGAACATCTCAAAGAGCAGCTAAGCTCTTACTTCAGCGACAAACTGTTGGGAATTGTTCGTGATATTGTTCTTCATATGAAAGGAAAGGACAAGAAAACCCAGGATATTTTACCAGAACAACCTTCTGGTAATATACACAAAGGAGATGCTGCATTGGAATTCATTAAGGTCGTCTGTGGTGTTTTGGCTCTTGATCAAAATGTCCAGCATGATGTACTGGTAATGAGGAAGAATTTACTGAAGTATGTGCGTGTAAGAGAGTTTGCACCAGAAGCCCAGTTTTCTGATCCCTGCTCGTCCATAATCTTACCCAACGTTATTTGCAGCTATTGTGACGATTGTCGAGATTTGGACTTGTGCAACGACTCGACTTTATTAGCACAGGAATGGCGCTGTGCCGTTCCACAGTGTGGACAACCATACAACCAAGAAGTGATGGAGAACGTGCTGCTTCAAATCGTGCGGCAGAGAGAGCGTCTCTATCATGTACAGGATCTGGAATGCGATCGCTGCAAGCAAGTCAAAGCAGCTCATTTATCTGAACAATGTGATTGTGCCGGCACATTCAAGTGCAAAGATGTGGAAGATTTTTTCAGCAAGATGCAGATTTTACACAAAGTAGCCACTCGTCAAAAGTTTCAACTGTTGCACGAGTTAACCTCATGGATCTTAGAACTTTCATAA 6669 40.85 MSGDSRRRGRVDTSRSKKQRIIRSAEEEIESKLGFDLFSEGDTRLGWLLTFAPSSLEDQDTGRVYSCIDLYFVAQDGSSFKLKYKFRPYFYAATKDKMETDVEAYLRRRYESQIADIEILEKEDLDLKNHLSGLRKAYLKLSFDTVQELMNVKRELLHVVESNWAKSDAAEAYDSILFGKREQKPQDFLECIVDLREYDVPYHVRFAIDHDLRCGQWYDVSVSSTCAALEKRKDLLQRAEVHVCAFDIETTKLPLKFPDAEYDMIMMISYMVDGQGYLIINREGVFGFGRKEGVEGLMVVECVGEDIENLEYTPKPEYEGFFKVTNVKNELELLQLWFGHMREVKPGIYVTYNGDYFDWPFIESRAAHHGLKMSDEVGFQCDKNQGECRSKFACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVRLAKEKPQMMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAYKATVVCPNKHQSDPEKFYNNRLLESETYIGGHVECLESGVFRSDIPTSFRLDPSAYDQLIHNLDRDLQYAIQVEGKMDLELVLNYCDVKNAIMEKLIRLRDEPVREEGPLIYHLDVAAMYPNIILTNRLQPTSIVTDEVCTACDFNRPGKTCLRKLEWVWRGEVFMAKKSDYYHLKKQIESEFVDGGNVRLSKSFLELPKLEQQAKLKERLKKYCQKAYKRVLDKPVNEVREAGICMRENSFYIDTVRSFRDRRYEYKGLNKVWKGKLSEAKASGNSIKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLIEKIGKPLELDTDGIWCALPGSFPENFTFKTKDSKKLTISYPCVMLNVDVARNNTNDQYQTLIDPVKKIYKTHSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFDKFLHGSTLEECYSVVASVANRWLDLLDNQGKDIADSELLDYISESSTMSKSLADYGEQKSCAVTTARRLADFLGDTMVRDKGLRCQYIVACEPKGTPVSERAVPVAIFETDAEIMKFYVRKWCKISSEVGIRSIIDWSYYKQRLSSSIQKIITIPAAMQKVANPVPRVVHPDWLHKKVREKDDKFRQQKVADMFASSNRGKDSKKNSDVSDINHVMNEDNPDDLEDFQKKTSSTNGPKPVARCYDVRGMKHSVISDNEINSKLQQNFHDGGCEPSSPLHVENIDKNIDYTGWLEMKKRKWKNTLDKRKKQRLVSLRTPHAANDATRELNGAMNNKVPPRTGVGSYFKRHEGSITRCHWQILQLVHSSQSGQYFAWAVVEGVMLKIPIIIPRVFYLNSKVPITDEFVGRRVNKTLPHGRHNHNLYEVVTDESQFRAQKNKLAALLADPEVEGIYESKVPLQFKSLFQIGCVCKVDKTAKKRSIQNGWSLDELQMKTTTECSYLEKPISFFYVYHSNSEGRAIYITFFPSTKSILVVVVSPYQNKDLSSTFLERQHREASEILFGESQPLKSGITYKLDYVVNVKEAEVILQRSISEHRSINHGPTVAVIQCPNVQLLKSGVRALEDFPCVSIPSNARDSQYQVLGWQQTAAKIGMQRCAASSQWLNERISLARYAHVPLGNFELDWLIFTADIFFSRALHDQQQVLWISDDGVPDIGGINMEDVCFSDEVQQRFLTYPGAYRKVSVELKIHHLSVNALLKSNQVNEMEGGSLFGFERDMQCGAQVSVEEGGFDEASSSAPAFRVLKQLIQRCLADAVTSGNVYADAILQHLYRWICSPQSRLHDPALHRLLHKVMQKVFALLLAELRKLGATIIFANFSKIIIDTGKFDLSAAKAYCDSLLKTVQTRDLFEWIELEPLQFWHSLLFMNQYNYGGIPAKNDESTDTESQVDIVANWNIAEYLPQKIQDHFVFIISQFLYIPWNYATKEAAARVSLQHGDTCTPSISVVAAESFEYRVTEHLKEQLSSYFSDKLLGIVRDIVLHMKGKDKKTQDILPEQPSGNIHKGDAALEFIKVVCGVLALDQNVQHDVLVMRKNLLKYVRVREFAPEAQFSDPCSSIILPNVICSYCDDCRDLDLCNDSTLLAQEWRCAVPQCGQPYNQEVMENVLLQIVRQRERLYHVQDLECDRCKQVKAAHLSEQCDCAGTFKCKDVEDFFSKMQILHKVATRQKFQLLHELTSWILELS 2222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19834976 19887786 + Sed0008797.2 Sed05g1213 713839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1213 2222 Gene3D - 958 1142 IPR042087 -
Sed05g1213 2222 MobiDBLite consensus disorder prediction 1177 1208 - -
Sed05g1213 2222 FunFam DNA polymerase epsilon catalytic subunit 774 954 - -
Sed05g1213 2222 SUPERFAMILY Ribonuclease H-like 62 508 IPR012337 -
Sed05g1213 2222 SMART polmehr3 239 860 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Sed05g1213 2222 Pfam Domain of unknown function (DUF1744) 1540 1913 IPR013697 GO:0003887(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0008270(InterPro)
Sed05g1213 2222 FunFam DNA polymerase epsilon catalytic subunit 958 1142 - -
Sed05g1213 2222 Pfam DNA polymerase family B, exonuclease domain 194 418 IPR006133 -
Sed05g1213 2222 SMART DUF1744_2 1528 1913 IPR013697 GO:0003887(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0008270(InterPro)
Sed05g1213 2222 Pfam DNA polymerase epsilon catalytic subunit A, thumb domain 963 1138 - -
Sed05g1213 2222 SUPERFAMILY DNA/RNA polymerases 522 1131 IPR043502 -
Sed05g1213 2222 CDD POLBc_epsilon 521 1139 - -
Sed05g1213 2222 Gene3D - 238 486 IPR036397 GO:0003676(InterPro)
Sed05g1213 2222 Gene3D DNA Polymerase, chain B, domain 1 57 233 - -
Sed05g1213 2222 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 4 2183 IPR029703 GO:0000278(PANTHER)|GO:0003677(PANTHER)|GO:0003677(InterPro)|GO:0003887(InterPro)|GO:0003887(PANTHER)|GO:0006260(InterPro)|GO:0006272(PANTHER)|GO:0006281(InterPro)|GO:0006287(PANTHER)|GO:0006297(PANTHER)|GO:0008310(PANTHER)|GO:0008622(PANTHER)|GO:0008622(InterPro)|GO:0045004(PANTHER)
Sed05g1213 2222 CDD DNA_polB_epsilon_exo 240 462 - -
Sed05g1213 2222 FunFam DNA polymerase epsilon catalytic subunit 240 486 - -
Sed05g1213 2222 Pfam Zinc finger domain of DNA polymerase-epsilon 2158 2219 IPR054475 -
Sed05g1213 2222 MobiDBLite consensus disorder prediction 1171 1220 - -
Sed05g1213 2222 FunFam DNA polymerase epsilon catalytic subunit 56 227 - -
Sed05g1213 2222 Gene3D Palm domain of DNA polymerase 770 954 IPR023211 -
Sed05g1213 2222 FunFam DNA polymerase epsilon catalytic subunit 741 816 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1213 Sed-Chr5:19834976 Sed05g1215 Sed-Chr5:19834976 0.00E+00 dispersed
Sed05g1212 Sed-Chr5:19834976 Sed05g1213 Sed-Chr5:19834976 0.00E+00 tandem
Sed05g1213 Sed-Chr5:19834976 Sed05g1214 Sed-Chr5:19834976 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1213 K02324 - csv:101208568 4055.75