Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1215 ATGAGCGGCGACAGTCGAAGGCGAGGCCGCGTAGACACAAGTAGGTCAAAGAAGCAGAGGATAATCCGGTCCGCCGAGGAGGAGATCGAATCCAAGCTTGGCTTTGATCTCTTCTCCGAAGGTGATACCAGGCTTGGATGGCTCCTCACTTTCGCTCCTTCATCTTTGGAGGATCAAGATACCGGAAGGGTCTATAGCTGCATTGACCTTTATTTTGTGGCACAGGATGGGAGCAGTTTCAAGTTAAAATATAAGTTCCGTCCTTATTTCTATGCAGCCACAAAGGATAAAATGGAGACTGATGTGGAGGCTTATTTGAGACGACGATATGAAAGTCAAATAGCTGACATTGAGATTTTAGAAAAAGAAGATCTTGATCTTAAGAATCACCTGTCAGGCTTGCGCAAGGCATATCTAAAGCTATCGTTTGACACTGTTCAAGAGTTGATGAATGTGAAGCGAGAACTTTTGCATGTTGTGGAAAGCAATTGGGCAAAATCTGATGCTGCAGAAGCATATGATTCTATTTTATTTGGGAAAAGAGAACAAAAGCCTCAAGATTTTTTAGAATGCATTGTTGATCTTCGAGAATATGATGTTCCATACCATGTTCGCTTTGCTATTGATCATGATTTGCGCTGCGGACAATGGTATGATGTTAGTGTATCGAGCACTTGTGCTGCACTTGAGAAGAGAAAAGATCTTCTGCAACGTGCTGAAGTTCACGTATGTGCATTTGATATTGAGACTACAAAGCTACCTTTAAAATTTCCAGATGCTGAATATGACATGATAATGATGATTTCCTATATGGTTGATGGACAAGGGTACTTGATTATCAACAGAGAGTGTGTTGGAGAAGATATTGAGAATTTGGAGTACACTCCAAAACCAGAATATGAAGGGTTCTTTAAAGTTACCAACGTGAAAAATGAGTTAGAGCTTCTCCAACTGTGGTTTGGCCATATGCGAGAGGTGAAACCTGGTATCTATGTCACATACAATGGTGATTATTTTGACTGGCCATTCATTGAAAGCAGAGCAGCCCATCATGGATTGAAAATGAGCGATGAAGTAGGATTTCAATGCGACAAGAATCAGGGAGAATGCCGTTCAAAATTTGCTTGTCATTTGGATTGCTTTGCCTGGGTAAAGCGTGATAGTTATCTTCCTCAGGGTAGCCAGGGTTTGAAGGCTGTCACAAAAGCTAAATTGGGTTATGATCCTCTTGAAGTGAATCCCGAGGATATGGTGCGGCTTGCAAAGGAAAAGCCTCAGATGATGGCTTCATATTCGGTTTCAGATGCTGTTGCTACGTACTACTTGTACATGACCTATGTTCATCCTTTTATTTTTTCTTTAGCAACTATCATTCCAATGTCACCTGATGAGGTGTTGCGCAAGGGAAGTGGGACCCTTTGTGAAATGCTTCTAATGGTTCAGGCTTACAAGGCAACTGTTGTGTGTCCTAACAAACACCAATCAGATCCAGAAAAGTTCTATAACAACCGCCTTCTTGAAAGTGAGACATATATTGGGGGTCATGTAGAATGTCTAGAGAGTGGTGTATTTAGATCCGACATTCCTACCAGTTTTAGGCTTGATCCATCTGCCTATGATCAATTGATACACAATCTGGATCGAGATCTGCAGTATGCCATACAAGTAGAAGGAAAGATGGACTTGGAGTTGGTGTTAAATTATTGCGATGTGAAGAATGCTATCATGGAAAAGCTTATCAGATTGCGGGATGAGCCTGTACGTGAAGAGGGCCCTCTGATATATCACCTTGATGTAGCTGCTATGTATCCGAACATTATTTTAACCAATAGACTTCAGCCGACATCAATAGTTACAGATGAGGTTTGTACTGCTTGCGACTTCAATCGTCCTGGGAAAACTTGTCTACGAAAACTTGAATGGGTTTGGCGTGGAGAGGTATTCATGGCTAAAAAAAGTGACTATTATCATTTGAAGAAGCAAATTGAATCTGAGTTTGTTGATGGCGGTAATGTTCGGTTGTCAAAATCATTTCTTGAACTACCAAAGCTGGAGCAACAAGCAAAGCTTAAAGAACGGTTGAAGAAATACTGTCAGAAGGCCTATAAACGTGTCCTTGATAAGCCAGTCAATGAAGTTCGAGAAGCAGGGATTTGCATGAGAGAAAACTCTTTCTATATTGACACTGTCCGTAGTTTTCGAGATAGACGATACGAATACAAAGGGCTCAATAAAGTATGGAAGGGGAAATTATCAGAAGCTAAAGCAAGTGGGAATTCAATCAAGATCCAGGAAGCCCAAGACATGGTAGTTCTTTATGATTCTCTACAACTTGCTCATAAATGTATCCTCAACTCTTTTTATGGATATGTGATGCGCAAGGGTGCTCGATGGTATTCGATGGAAATGGCTGGGGTAGTTACGTATACCGGAGCAAAAATCATTCAGAATGCTCGTCTGTTAATTGAGAAAATTGGAAAACCATTGGAGTTAGATACCGATGGTATCTGGTGTGCACTACCTGGATCATTCCCAGAGAACTTTACTTTCAAAACGAAAGATTCGAAGAAGTTGACCATTTCATATCCATGTGTTATGCTCAATGTTGATGTGGCAAGGAACAATACAAATGACCAATACCAGACGCTTATAGATCCTGTGAAGAAAATATATAAAACACACAGTGAATGCTCAATTGAATTTGAAGTAGATGGACCATACAAGGCAATGATTCTTCCTGCTTCCAAGGAAGAGGGCATTTTGATCAAGAAGAGATATGCGGTCTTCAATGATGATGGAACCCTTGCGGAGCTTAAAGGCTTTGAGATTAAGCGTAGGGGGGAGTTAAAGCTCATCAAAGTTTTCCAGGCTGAACTTTTTGACAAGTTTCTTCACGGTTCCACCTTAGAAGAATGCTATTCAGTAGTTGCATCTGTTGCAAATCGCTGGCTCGATCTTCTAGATAATCAAGGAAAAGATATTGCAGATAGCGAGTTGCTTGATTATATATCTGAATCCAGTACCATGAGCAAATCTTTGGCAGACTATGGAGAGCAGAAGTCTTGTGCTGTTACCACTGCAAGACGTCTTGCAGATTTTCTTGGTGATACAATGGTCAGGGATAAAGGCCTACGTTGTCAATATATAGTTGCATGTGAACCTAAGGGAACACCTGTAAGTGAGCGTGCTGTACCAGTTGCTATATTTGAGACTGATGCAGAGATTATGAAATTTTATGTACGGAAATGGTGCAAGATTTCATCTGAAGTTGGCATCCGATCCATCATTGACTGGTCCTACTACAAGCAACGTCTTAGCTCATCCATTCAAAAAATTATAACAATTCCAGCAGCCATGCAAAAGGTTGCAAATCCTGTTCCTAGGGTAGTCCATCCCGATTGGTTACATAAGAAAGTTCGTGAGAAGGATGATAAATTTCGCCAACAAAAAGTAGCTGACATGTTTGCATCCTCTAACAGAGGTAAAGATTCAAAGAAGAATAGTGATGTCAGTGACATAAACCATGTTATGAATGAAGATAATCCTGATGACTTGGAAGATTTTCAAAAGAAAACAAGTTCTACAAATGGCCCCAAACCAGTTGCTCGATGTTATGATGTCAGAGGCATGAAACATTCAGTTATCAGTGATAACGAAATAAACTCCAAGCTGCAGCAGAATTTTCATGATGGAGGATGTGAGCCTTCTTCACCCTTGCATGTTGAAAACATTGACAAAAATATTGATTACACTGGATGGCTTGAAATGAAGAAGCGAAAGTGGAAGAATACTTTGGACAAGAGGAAGAAGCAAAGGTTAGTAAGTTTAAGGACTCCGCATGCTGCTAATGATGCTACACGGGAGTTAAATGGTGCTATGAATAATAAAGTGCCTCCTAGAACTGGTGTTGGGTCATATTTTAAGAGGCATGAAGGATCTATAACACGCTGCCATTGGCAGATTTTACAGCTTGTTCATAGTTCACAGAGTGGCCAATATTTTGCTTGGGCTGTTGTAGAAGGAGTTATGCTAAAGATTCCTATTATTATTCCTAGAGTGTTTTACCTTAATTCTAAAGTACCCATTACAGATGAATTTGTGGGTAGGCGTGTTAACAAAACTCTTCCCCACGGAAGGCACAACCATAACCTGTATGAGGTCGTGACTGATGAAAGTCAATTTAGGGCCCAGAAGAATAAACTTGCAGCTCTCCTTGCTGATCCAGAAGTAGAGGGAATCTATGAAAGTAAGGTACCATTGCAGTTCAAGTCCCTCTTTCAGATTGGTTGTGTCTGTAAAGTTGATAAAACTGCTAAAAAACGAAGCATTCAAAATGGATGGAGTCTGGACGAACTGCAAATGAAAACTACAACAGAATGTAGTTACCTGGAAAAGCCTATCTCTTTCTTCTATGTGTATCACAGCAATTCTGAAGGAAGAGCTATCTATATTACATTTTTCCCCTCTACAAAATCAATACTTGTGGTGGTGGTTAGTCCTTACCAGAACAAAGACTTGTCATCAACTTTTCTTGAAAGGCAACATCGTGAAGCTTCCGAAATACTGTTTGGTGAATCACAACCTCTTAAGAGTGGTATAACTTACAAGCTTGACTATGTTGTTAACGTCAAAGAAGCAGAAGTGATTTTGCAAAGATCGATATCGGAACACAGGAGCATAAACCATGGACCTACTGTAGCTGTAATTCAATGCCCAAATGTGCAACTTCTGAAGTCAGGTGTTAGAGCATTAGAAGATTTTCCATGCGTGAGCATTCCTTCTAATGCTCGTGATAGCCAATATCAGGTTCTTGGTTGGCAACAAACAGCTGCAAAGATTGGAATGCAACGTTGTGCTGCATCATCCCAATGGTTGAATGAGAGAATCTCTCTTGCTAGATATGCCCATGTACCATTAGGAAATTTTGAACTTGATTGGCTAATTTTTACAGCTGATATATTCTTCTCAAGAGCATTACATGATCAACAGCAGGTACTATGGATATCAGATGATGGTGTTCCAGATATAGGAGGCATTAACATGGAAGATGTGTGTTTTTCGGATGAGGTCCAGCAACGTTTTCTGACGTACCCGGGAGCATATAGAAAAGTTTCTGTGGAGCTGAAGATCCATCATTTGTCTGTCAATGCTCTGCTGAAGAGCAACCAAGTAAATGAAATGGAAGGAGGTAGTTTGTTTGGCTTTGAACGTGATATGCAATGTGGGGCCCAAGTTTCTGTTGAAGAAGGTGGTTTTGATGAGGCTTCATCTTCTGCGCCGGCATTTCGTGTTCTGAAACAATTGATACAAAGGTGTCTTGCTGATGCAGTTACATCTGGAAATGTATATGCTGATGCAATTTTGCAGCATCTGTACCGATGGATTTGCAGCCCCCAATCAAGACTTCATGACCCAGCTCTTCATCGCTTGCTTCACAAAGTTATGCAAAAGGTGTTTGCTCTTTTGTTGGCTGAACTACGAAAATTAGGTGCCACCATTATATTTGCAAACTTCTCAAAAATTATTATAGACACGGGAAAGTTTGATCTCTCTGCCGCTAAAGCATACTGTGATAGCTTGCTGAAAACAGTGCAAACGAGGGATCTGTTTGAGTGGATTGAGCTGGAACCGTTGCAGTTCTGGCACTCGCTGTTGTTTATGAATCAGTATAACTATGGTGGAATCCCAGCAAAAAATGATGAGAGCACAGATACTGAATCTCAAGTTGATATAGTGGCCAACTGGAACATTGCTGAATATTTACCCCAGAAGATTCAGGATCACTTCGTTTTTATCATCTCTCAATTTTTGTATATTCCATGGAATTATGCAACCAAGGAAGCTGCAGCAAGAGTGTCATTGCAGCATGGTGACACATGTACTCCATCTATTTCAGTTGTAGCTGCTGAATCATTTGAATATCGTGTGACTGAACATCTCAAAGAGCAGCTAAGCTCTTACTTCAGCGACAAACTGTTGGGAATTGTTCGTGATATTGTTCTTCATATGAAAGGAAAGGACAAGAAAACCCAGGATATTTTACCAGAACAACCTTCTGGTAATATACACAAAGGAGATGCTGCATTGGAATTCATTAAGGTCGTCTGTGGTGTTTTGGCTCTTGATCAAAATGTCCAGCATGATGTACTGGTAATGAGGAAGAATTTACTGAAGTATGTGCGTGTAAGAGAGTTTGCACCAGAAGCCCAGTTTTCTGATCCCTGCTCGTCCATAATCTTACCCAACGTTATTTGCAGCTATTGTGACGATTGTCGAGATTTGGACTTGTGCAACGACTCGACTTTATTAGCACAGGAATGGCGCTGTGCCGTTCCACAGTGTGGACAACCATACAACCAAGAAGTGATGGAGAACGTGCTGCTTCAAATCGTGCGGCAGAGAGAGCGTCTCTATCATGTACAGGATCTGGAATGCGATCGCTGCAAGCAAGTCAAAGCAGCTCATTTATCTGAACAATGTGATTGTGCCGGCACATTCAAGTGCAAAGATGTGGAAGATTTTTTCAGCAAGATGCAGATTTTACACAAAGTAGCCACTCGTCAAAAGTTTCAACTGTTGCACGAGTTAACCTCATGGATCTTAGAACTTTCATAA 6615 40.8 MSGDSRRRGRVDTSRSKKQRIIRSAEEEIESKLGFDLFSEGDTRLGWLLTFAPSSLEDQDTGRVYSCIDLYFVAQDGSSFKLKYKFRPYFYAATKDKMETDVEAYLRRRYESQIADIEILEKEDLDLKNHLSGLRKAYLKLSFDTVQELMNVKRELLHVVESNWAKSDAAEAYDSILFGKREQKPQDFLECIVDLREYDVPYHVRFAIDHDLRCGQWYDVSVSSTCAALEKRKDLLQRAEVHVCAFDIETTKLPLKFPDAEYDMIMMISYMVDGQGYLIINRECVGEDIENLEYTPKPEYEGFFKVTNVKNELELLQLWFGHMREVKPGIYVTYNGDYFDWPFIESRAAHHGLKMSDEVGFQCDKNQGECRSKFACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVRLAKEKPQMMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAYKATVVCPNKHQSDPEKFYNNRLLESETYIGGHVECLESGVFRSDIPTSFRLDPSAYDQLIHNLDRDLQYAIQVEGKMDLELVLNYCDVKNAIMEKLIRLRDEPVREEGPLIYHLDVAAMYPNIILTNRLQPTSIVTDEVCTACDFNRPGKTCLRKLEWVWRGEVFMAKKSDYYHLKKQIESEFVDGGNVRLSKSFLELPKLEQQAKLKERLKKYCQKAYKRVLDKPVNEVREAGICMRENSFYIDTVRSFRDRRYEYKGLNKVWKGKLSEAKASGNSIKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLIEKIGKPLELDTDGIWCALPGSFPENFTFKTKDSKKLTISYPCVMLNVDVARNNTNDQYQTLIDPVKKIYKTHSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFDKFLHGSTLEECYSVVASVANRWLDLLDNQGKDIADSELLDYISESSTMSKSLADYGEQKSCAVTTARRLADFLGDTMVRDKGLRCQYIVACEPKGTPVSERAVPVAIFETDAEIMKFYVRKWCKISSEVGIRSIIDWSYYKQRLSSSIQKIITIPAAMQKVANPVPRVVHPDWLHKKVREKDDKFRQQKVADMFASSNRGKDSKKNSDVSDINHVMNEDNPDDLEDFQKKTSSTNGPKPVARCYDVRGMKHSVISDNEINSKLQQNFHDGGCEPSSPLHVENIDKNIDYTGWLEMKKRKWKNTLDKRKKQRLVSLRTPHAANDATRELNGAMNNKVPPRTGVGSYFKRHEGSITRCHWQILQLVHSSQSGQYFAWAVVEGVMLKIPIIIPRVFYLNSKVPITDEFVGRRVNKTLPHGRHNHNLYEVVTDESQFRAQKNKLAALLADPEVEGIYESKVPLQFKSLFQIGCVCKVDKTAKKRSIQNGWSLDELQMKTTTECSYLEKPISFFYVYHSNSEGRAIYITFFPSTKSILVVVVSPYQNKDLSSTFLERQHREASEILFGESQPLKSGITYKLDYVVNVKEAEVILQRSISEHRSINHGPTVAVIQCPNVQLLKSGVRALEDFPCVSIPSNARDSQYQVLGWQQTAAKIGMQRCAASSQWLNERISLARYAHVPLGNFELDWLIFTADIFFSRALHDQQQVLWISDDGVPDIGGINMEDVCFSDEVQQRFLTYPGAYRKVSVELKIHHLSVNALLKSNQVNEMEGGSLFGFERDMQCGAQVSVEEGGFDEASSSAPAFRVLKQLIQRCLADAVTSGNVYADAILQHLYRWICSPQSRLHDPALHRLLHKVMQKVFALLLAELRKLGATIIFANFSKIIIDTGKFDLSAAKAYCDSLLKTVQTRDLFEWIELEPLQFWHSLLFMNQYNYGGIPAKNDESTDTESQVDIVANWNIAEYLPQKIQDHFVFIISQFLYIPWNYATKEAAARVSLQHGDTCTPSISVVAAESFEYRVTEHLKEQLSSYFSDKLLGIVRDIVLHMKGKDKKTQDILPEQPSGNIHKGDAALEFIKVVCGVLALDQNVQHDVLVMRKNLLKYVRVREFAPEAQFSDPCSSIILPNVICSYCDDCRDLDLCNDSTLLAQEWRCAVPQCGQPYNQEVMENVLLQIVRQRERLYHVQDLECDRCKQVKAAHLSEQCDCAGTFKCKDVEDFFSKMQILHKVATRQKFQLLHELTSWILELS 2204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19834976 19887786 + Sed0008797.4 Sed05g1215 713841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1215 2204 Gene3D - 238 468 IPR036397 GO:0003676(InterPro)
Sed05g1215 2204 CDD POLBc_epsilon 503 1121 - -
Sed05g1215 2204 Gene3D DNA Polymerase, chain B, domain 1 57 234 - -
Sed05g1215 2204 Gene3D - 940 1124 IPR042087 -
Sed05g1215 2204 FunFam DNA polymerase epsilon catalytic subunit 240 468 - -
Sed05g1215 2204 CDD DNA_polB_epsilon_exo 240 444 - -
Sed05g1215 2204 MobiDBLite consensus disorder prediction 1153 1202 - -
Sed05g1215 2204 FunFam DNA polymerase epsilon catalytic subunit 940 1124 - -
Sed05g1215 2204 SUPERFAMILY DNA/RNA polymerases 504 1113 IPR043502 -
Sed05g1215 2204 MobiDBLite consensus disorder prediction 1159 1190 - -
Sed05g1215 2204 FunFam DNA polymerase epsilon catalytic subunit 56 227 - -
Sed05g1215 2204 SUPERFAMILY Ribonuclease H-like 66 467 IPR012337 -
Sed05g1215 2204 SMART DUF1744_2 1510 1895 IPR013697 GO:0003887(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0008270(InterPro)
Sed05g1215 2204 Pfam Domain of unknown function (DUF1744) 1522 1895 IPR013697 GO:0003887(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0008270(InterPro)
Sed05g1215 2204 SMART polmehr3 239 842 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Sed05g1215 2204 Pfam Zinc finger domain of DNA polymerase-epsilon 2140 2201 IPR054475 -
Sed05g1215 2204 Pfam DNA polymerase family B, exonuclease domain 194 400 IPR006133 -
Sed05g1215 2204 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 4 2165 IPR029703 GO:0000278(PANTHER)|GO:0003677(PANTHER)|GO:0003677(InterPro)|GO:0003887(InterPro)|GO:0003887(PANTHER)|GO:0006260(InterPro)|GO:0006272(PANTHER)|GO:0006281(InterPro)|GO:0006287(PANTHER)|GO:0006297(PANTHER)|GO:0008310(PANTHER)|GO:0008622(PANTHER)|GO:0008622(InterPro)|GO:0045004(PANTHER)
Sed05g1215 2204 FunFam DNA polymerase epsilon catalytic subunit 756 936 - -
Sed05g1215 2204 Pfam DNA polymerase epsilon catalytic subunit A, thumb domain 945 1120 - -
Sed05g1215 2204 Gene3D Palm domain of DNA polymerase 752 936 IPR023211 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1212 Sed-Chr5:19834976 Sed05g1215 Sed-Chr5:19834976 0.00E+00 dispersed
Sed05g1213 Sed-Chr5:19834976 Sed05g1215 Sed-Chr5:19834976 0.00E+00 dispersed
Sed05g1214 Sed-Chr5:19834976 Sed05g1215 Sed-Chr5:19834976 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1215 K02324 - csv:101208568 4066.92