Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed05g1215 | ATGAGCGGCGACAGTCGAAGGCGAGGCCGCGTAGACACAAGTAGGTCAAAGAAGCAGAGGATAATCCGGTCCGCCGAGGAGGAGATCGAATCCAAGCTTGGCTTTGATCTCTTCTCCGAAGGTGATACCAGGCTTGGATGGCTCCTCACTTTCGCTCCTTCATCTTTGGAGGATCAAGATACCGGAAGGGTCTATAGCTGCATTGACCTTTATTTTGTGGCACAGGATGGGAGCAGTTTCAAGTTAAAATATAAGTTCCGTCCTTATTTCTATGCAGCCACAAAGGATAAAATGGAGACTGATGTGGAGGCTTATTTGAGACGACGATATGAAAGTCAAATAGCTGACATTGAGATTTTAGAAAAAGAAGATCTTGATCTTAAGAATCACCTGTCAGGCTTGCGCAAGGCATATCTAAAGCTATCGTTTGACACTGTTCAAGAGTTGATGAATGTGAAGCGAGAACTTTTGCATGTTGTGGAAAGCAATTGGGCAAAATCTGATGCTGCAGAAGCATATGATTCTATTTTATTTGGGAAAAGAGAACAAAAGCCTCAAGATTTTTTAGAATGCATTGTTGATCTTCGAGAATATGATGTTCCATACCATGTTCGCTTTGCTATTGATCATGATTTGCGCTGCGGACAATGGTATGATGTTAGTGTATCGAGCACTTGTGCTGCACTTGAGAAGAGAAAAGATCTTCTGCAACGTGCTGAAGTTCACGTATGTGCATTTGATATTGAGACTACAAAGCTACCTTTAAAATTTCCAGATGCTGAATATGACATGATAATGATGATTTCCTATATGGTTGATGGACAAGGGTACTTGATTATCAACAGAGAGTGTGTTGGAGAAGATATTGAGAATTTGGAGTACACTCCAAAACCAGAATATGAAGGGTTCTTTAAAGTTACCAACGTGAAAAATGAGTTAGAGCTTCTCCAACTGTGGTTTGGCCATATGCGAGAGGTGAAACCTGGTATCTATGTCACATACAATGGTGATTATTTTGACTGGCCATTCATTGAAAGCAGAGCAGCCCATCATGGATTGAAAATGAGCGATGAAGTAGGATTTCAATGCGACAAGAATCAGGGAGAATGCCGTTCAAAATTTGCTTGTCATTTGGATTGCTTTGCCTGGGTAAAGCGTGATAGTTATCTTCCTCAGGGTAGCCAGGGTTTGAAGGCTGTCACAAAAGCTAAATTGGGTTATGATCCTCTTGAAGTGAATCCCGAGGATATGGTGCGGCTTGCAAAGGAAAAGCCTCAGATGATGGCTTCATATTCGGTTTCAGATGCTGTTGCTACGTACTACTTGTACATGACCTATGTTCATCCTTTTATTTTTTCTTTAGCAACTATCATTCCAATGTCACCTGATGAGGTGTTGCGCAAGGGAAGTGGGACCCTTTGTGAAATGCTTCTAATGGTTCAGGCTTACAAGGCAACTGTTGTGTGTCCTAACAAACACCAATCAGATCCAGAAAAGTTCTATAACAACCGCCTTCTTGAAAGTGAGACATATATTGGGGGTCATGTAGAATGTCTAGAGAGTGGTGTATTTAGATCCGACATTCCTACCAGTTTTAGGCTTGATCCATCTGCCTATGATCAATTGATACACAATCTGGATCGAGATCTGCAGTATGCCATACAAGTAGAAGGAAAGATGGACTTGGAGTTGGTGTTAAATTATTGCGATGTGAAGAATGCTATCATGGAAAAGCTTATCAGATTGCGGGATGAGCCTGTACGTGAAGAGGGCCCTCTGATATATCACCTTGATGTAGCTGCTATGTATCCGAACATTATTTTAACCAATAGACTTCAGCCGACATCAATAGTTACAGATGAGGTTTGTACTGCTTGCGACTTCAATCGTCCTGGGAAAACTTGTCTACGAAAACTTGAATGGGTTTGGCGTGGAGAGGTATTCATGGCTAAAAAAAGTGACTATTATCATTTGAAGAAGCAAATTGAATCTGAGTTTGTTGATGGCGGTAATGTTCGGTTGTCAAAATCATTTCTTGAACTACCAAAGCTGGAGCAACAAGCAAAGCTTAAAGAACGGTTGAAGAAATACTGTCAGAAGGCCTATAAACGTGTCCTTGATAAGCCAGTCAATGAAGTTCGAGAAGCAGGGATTTGCATGAGAGAAAACTCTTTCTATATTGACACTGTCCGTAGTTTTCGAGATAGACGATACGAATACAAAGGGCTCAATAAAGTATGGAAGGGGAAATTATCAGAAGCTAAAGCAAGTGGGAATTCAATCAAGATCCAGGAAGCCCAAGACATGGTAGTTCTTTATGATTCTCTACAACTTGCTCATAAATGTATCCTCAACTCTTTTTATGGATATGTGATGCGCAAGGGTGCTCGATGGTATTCGATGGAAATGGCTGGGGTAGTTACGTATACCGGAGCAAAAATCATTCAGAATGCTCGTCTGTTAATTGAGAAAATTGGAAAACCATTGGAGTTAGATACCGATGGTATCTGGTGTGCACTACCTGGATCATTCCCAGAGAACTTTACTTTCAAAACGAAAGATTCGAAGAAGTTGACCATTTCATATCCATGTGTTATGCTCAATGTTGATGTGGCAAGGAACAATACAAATGACCAATACCAGACGCTTATAGATCCTGTGAAGAAAATATATAAAACACACAGTGAATGCTCAATTGAATTTGAAGTAGATGGACCATACAAGGCAATGATTCTTCCTGCTTCCAAGGAAGAGGGCATTTTGATCAAGAAGAGATATGCGGTCTTCAATGATGATGGAACCCTTGCGGAGCTTAAAGGCTTTGAGATTAAGCGTAGGGGGGAGTTAAAGCTCATCAAAGTTTTCCAGGCTGAACTTTTTGACAAGTTTCTTCACGGTTCCACCTTAGAAGAATGCTATTCAGTAGTTGCATCTGTTGCAAATCGCTGGCTCGATCTTCTAGATAATCAAGGAAAAGATATTGCAGATAGCGAGTTGCTTGATTATATATCTGAATCCAGTACCATGAGCAAATCTTTGGCAGACTATGGAGAGCAGAAGTCTTGTGCTGTTACCACTGCAAGACGTCTTGCAGATTTTCTTGGTGATACAATGGTCAGGGATAAAGGCCTACGTTGTCAATATATAGTTGCATGTGAACCTAAGGGAACACCTGTAAGTGAGCGTGCTGTACCAGTTGCTATATTTGAGACTGATGCAGAGATTATGAAATTTTATGTACGGAAATGGTGCAAGATTTCATCTGAAGTTGGCATCCGATCCATCATTGACTGGTCCTACTACAAGCAACGTCTTAGCTCATCCATTCAAAAAATTATAACAATTCCAGCAGCCATGCAAAAGGTTGCAAATCCTGTTCCTAGGGTAGTCCATCCCGATTGGTTACATAAGAAAGTTCGTGAGAAGGATGATAAATTTCGCCAACAAAAAGTAGCTGACATGTTTGCATCCTCTAACAGAGGTAAAGATTCAAAGAAGAATAGTGATGTCAGTGACATAAACCATGTTATGAATGAAGATAATCCTGATGACTTGGAAGATTTTCAAAAGAAAACAAGTTCTACAAATGGCCCCAAACCAGTTGCTCGATGTTATGATGTCAGAGGCATGAAACATTCAGTTATCAGTGATAACGAAATAAACTCCAAGCTGCAGCAGAATTTTCATGATGGAGGATGTGAGCCTTCTTCACCCTTGCATGTTGAAAACATTGACAAAAATATTGATTACACTGGATGGCTTGAAATGAAGAAGCGAAAGTGGAAGAATACTTTGGACAAGAGGAAGAAGCAAAGGTTAGTAAGTTTAAGGACTCCGCATGCTGCTAATGATGCTACACGGGAGTTAAATGGTGCTATGAATAATAAAGTGCCTCCTAGAACTGGTGTTGGGTCATATTTTAAGAGGCATGAAGGATCTATAACACGCTGCCATTGGCAGATTTTACAGCTTGTTCATAGTTCACAGAGTGGCCAATATTTTGCTTGGGCTGTTGTAGAAGGAGTTATGCTAAAGATTCCTATTATTATTCCTAGAGTGTTTTACCTTAATTCTAAAGTACCCATTACAGATGAATTTGTGGGTAGGCGTGTTAACAAAACTCTTCCCCACGGAAGGCACAACCATAACCTGTATGAGGTCGTGACTGATGAAAGTCAATTTAGGGCCCAGAAGAATAAACTTGCAGCTCTCCTTGCTGATCCAGAAGTAGAGGGAATCTATGAAAGTAAGGTACCATTGCAGTTCAAGTCCCTCTTTCAGATTGGTTGTGTCTGTAAAGTTGATAAAACTGCTAAAAAACGAAGCATTCAAAATGGATGGAGTCTGGACGAACTGCAAATGAAAACTACAACAGAATGTAGTTACCTGGAAAAGCCTATCTCTTTCTTCTATGTGTATCACAGCAATTCTGAAGGAAGAGCTATCTATATTACATTTTTCCCCTCTACAAAATCAATACTTGTGGTGGTGGTTAGTCCTTACCAGAACAAAGACTTGTCATCAACTTTTCTTGAAAGGCAACATCGTGAAGCTTCCGAAATACTGTTTGGTGAATCACAACCTCTTAAGAGTGGTATAACTTACAAGCTTGACTATGTTGTTAACGTCAAAGAAGCAGAAGTGATTTTGCAAAGATCGATATCGGAACACAGGAGCATAAACCATGGACCTACTGTAGCTGTAATTCAATGCCCAAATGTGCAACTTCTGAAGTCAGGTGTTAGAGCATTAGAAGATTTTCCATGCGTGAGCATTCCTTCTAATGCTCGTGATAGCCAATATCAGGTTCTTGGTTGGCAACAAACAGCTGCAAAGATTGGAATGCAACGTTGTGCTGCATCATCCCAATGGTTGAATGAGAGAATCTCTCTTGCTAGATATGCCCATGTACCATTAGGAAATTTTGAACTTGATTGGCTAATTTTTACAGCTGATATATTCTTCTCAAGAGCATTACATGATCAACAGCAGGTACTATGGATATCAGATGATGGTGTTCCAGATATAGGAGGCATTAACATGGAAGATGTGTGTTTTTCGGATGAGGTCCAGCAACGTTTTCTGACGTACCCGGGAGCATATAGAAAAGTTTCTGTGGAGCTGAAGATCCATCATTTGTCTGTCAATGCTCTGCTGAAGAGCAACCAAGTAAATGAAATGGAAGGAGGTAGTTTGTTTGGCTTTGAACGTGATATGCAATGTGGGGCCCAAGTTTCTGTTGAAGAAGGTGGTTTTGATGAGGCTTCATCTTCTGCGCCGGCATTTCGTGTTCTGAAACAATTGATACAAAGGTGTCTTGCTGATGCAGTTACATCTGGAAATGTATATGCTGATGCAATTTTGCAGCATCTGTACCGATGGATTTGCAGCCCCCAATCAAGACTTCATGACCCAGCTCTTCATCGCTTGCTTCACAAAGTTATGCAAAAGGTGTTTGCTCTTTTGTTGGCTGAACTACGAAAATTAGGTGCCACCATTATATTTGCAAACTTCTCAAAAATTATTATAGACACGGGAAAGTTTGATCTCTCTGCCGCTAAAGCATACTGTGATAGCTTGCTGAAAACAGTGCAAACGAGGGATCTGTTTGAGTGGATTGAGCTGGAACCGTTGCAGTTCTGGCACTCGCTGTTGTTTATGAATCAGTATAACTATGGTGGAATCCCAGCAAAAAATGATGAGAGCACAGATACTGAATCTCAAGTTGATATAGTGGCCAACTGGAACATTGCTGAATATTTACCCCAGAAGATTCAGGATCACTTCGTTTTTATCATCTCTCAATTTTTGTATATTCCATGGAATTATGCAACCAAGGAAGCTGCAGCAAGAGTGTCATTGCAGCATGGTGACACATGTACTCCATCTATTTCAGTTGTAGCTGCTGAATCATTTGAATATCGTGTGACTGAACATCTCAAAGAGCAGCTAAGCTCTTACTTCAGCGACAAACTGTTGGGAATTGTTCGTGATATTGTTCTTCATATGAAAGGAAAGGACAAGAAAACCCAGGATATTTTACCAGAACAACCTTCTGGTAATATACACAAAGGAGATGCTGCATTGGAATTCATTAAGGTCGTCTGTGGTGTTTTGGCTCTTGATCAAAATGTCCAGCATGATGTACTGGTAATGAGGAAGAATTTACTGAAGTATGTGCGTGTAAGAGAGTTTGCACCAGAAGCCCAGTTTTCTGATCCCTGCTCGTCCATAATCTTACCCAACGTTATTTGCAGCTATTGTGACGATTGTCGAGATTTGGACTTGTGCAACGACTCGACTTTATTAGCACAGGAATGGCGCTGTGCCGTTCCACAGTGTGGACAACCATACAACCAAGAAGTGATGGAGAACGTGCTGCTTCAAATCGTGCGGCAGAGAGAGCGTCTCTATCATGTACAGGATCTGGAATGCGATCGCTGCAAGCAAGTCAAAGCAGCTCATTTATCTGAACAATGTGATTGTGCCGGCACATTCAAGTGCAAAGATGTGGAAGATTTTTTCAGCAAGATGCAGATTTTACACAAAGTAGCCACTCGTCAAAAGTTTCAACTGTTGCACGAGTTAACCTCATGGATCTTAGAACTTTCATAA | 6615 | 40.8 | MSGDSRRRGRVDTSRSKKQRIIRSAEEEIESKLGFDLFSEGDTRLGWLLTFAPSSLEDQDTGRVYSCIDLYFVAQDGSSFKLKYKFRPYFYAATKDKMETDVEAYLRRRYESQIADIEILEKEDLDLKNHLSGLRKAYLKLSFDTVQELMNVKRELLHVVESNWAKSDAAEAYDSILFGKREQKPQDFLECIVDLREYDVPYHVRFAIDHDLRCGQWYDVSVSSTCAALEKRKDLLQRAEVHVCAFDIETTKLPLKFPDAEYDMIMMISYMVDGQGYLIINRECVGEDIENLEYTPKPEYEGFFKVTNVKNELELLQLWFGHMREVKPGIYVTYNGDYFDWPFIESRAAHHGLKMSDEVGFQCDKNQGECRSKFACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVRLAKEKPQMMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAYKATVVCPNKHQSDPEKFYNNRLLESETYIGGHVECLESGVFRSDIPTSFRLDPSAYDQLIHNLDRDLQYAIQVEGKMDLELVLNYCDVKNAIMEKLIRLRDEPVREEGPLIYHLDVAAMYPNIILTNRLQPTSIVTDEVCTACDFNRPGKTCLRKLEWVWRGEVFMAKKSDYYHLKKQIESEFVDGGNVRLSKSFLELPKLEQQAKLKERLKKYCQKAYKRVLDKPVNEVREAGICMRENSFYIDTVRSFRDRRYEYKGLNKVWKGKLSEAKASGNSIKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLIEKIGKPLELDTDGIWCALPGSFPENFTFKTKDSKKLTISYPCVMLNVDVARNNTNDQYQTLIDPVKKIYKTHSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFDKFLHGSTLEECYSVVASVANRWLDLLDNQGKDIADSELLDYISESSTMSKSLADYGEQKSCAVTTARRLADFLGDTMVRDKGLRCQYIVACEPKGTPVSERAVPVAIFETDAEIMKFYVRKWCKISSEVGIRSIIDWSYYKQRLSSSIQKIITIPAAMQKVANPVPRVVHPDWLHKKVREKDDKFRQQKVADMFASSNRGKDSKKNSDVSDINHVMNEDNPDDLEDFQKKTSSTNGPKPVARCYDVRGMKHSVISDNEINSKLQQNFHDGGCEPSSPLHVENIDKNIDYTGWLEMKKRKWKNTLDKRKKQRLVSLRTPHAANDATRELNGAMNNKVPPRTGVGSYFKRHEGSITRCHWQILQLVHSSQSGQYFAWAVVEGVMLKIPIIIPRVFYLNSKVPITDEFVGRRVNKTLPHGRHNHNLYEVVTDESQFRAQKNKLAALLADPEVEGIYESKVPLQFKSLFQIGCVCKVDKTAKKRSIQNGWSLDELQMKTTTECSYLEKPISFFYVYHSNSEGRAIYITFFPSTKSILVVVVSPYQNKDLSSTFLERQHREASEILFGESQPLKSGITYKLDYVVNVKEAEVILQRSISEHRSINHGPTVAVIQCPNVQLLKSGVRALEDFPCVSIPSNARDSQYQVLGWQQTAAKIGMQRCAASSQWLNERISLARYAHVPLGNFELDWLIFTADIFFSRALHDQQQVLWISDDGVPDIGGINMEDVCFSDEVQQRFLTYPGAYRKVSVELKIHHLSVNALLKSNQVNEMEGGSLFGFERDMQCGAQVSVEEGGFDEASSSAPAFRVLKQLIQRCLADAVTSGNVYADAILQHLYRWICSPQSRLHDPALHRLLHKVMQKVFALLLAELRKLGATIIFANFSKIIIDTGKFDLSAAKAYCDSLLKTVQTRDLFEWIELEPLQFWHSLLFMNQYNYGGIPAKNDESTDTESQVDIVANWNIAEYLPQKIQDHFVFIISQFLYIPWNYATKEAAARVSLQHGDTCTPSISVVAAESFEYRVTEHLKEQLSSYFSDKLLGIVRDIVLHMKGKDKKTQDILPEQPSGNIHKGDAALEFIKVVCGVLALDQNVQHDVLVMRKNLLKYVRVREFAPEAQFSDPCSSIILPNVICSYCDDCRDLDLCNDSTLLAQEWRCAVPQCGQPYNQEVMENVLLQIVRQRERLYHVQDLECDRCKQVKAAHLSEQCDCAGTFKCKDVEDFFSKMQILHKVATRQKFQLLHELTSWILELS | 2204 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 19834976 | 19887786 | + | Sed0008797.4 | Sed05g1215 | 713841 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed05g1215 | 2204 | Gene3D | - | 238 | 468 | IPR036397 | GO:0003676(InterPro) | |
Sed05g1215 | 2204 | CDD | POLBc_epsilon | 503 | 1121 | - | - | |
Sed05g1215 | 2204 | Gene3D | DNA Polymerase, chain B, domain 1 | 57 | 234 | - | - | |
Sed05g1215 | 2204 | Gene3D | - | 940 | 1124 | IPR042087 | - | |
Sed05g1215 | 2204 | FunFam | DNA polymerase epsilon catalytic subunit | 240 | 468 | - | - | |
Sed05g1215 | 2204 | CDD | DNA_polB_epsilon_exo | 240 | 444 | - | - | |
Sed05g1215 | 2204 | MobiDBLite | consensus disorder prediction | 1153 | 1202 | - | - | |
Sed05g1215 | 2204 | FunFam | DNA polymerase epsilon catalytic subunit | 940 | 1124 | - | - | |
Sed05g1215 | 2204 | SUPERFAMILY | DNA/RNA polymerases | 504 | 1113 | IPR043502 | - | |
Sed05g1215 | 2204 | MobiDBLite | consensus disorder prediction | 1159 | 1190 | - | - | |
Sed05g1215 | 2204 | FunFam | DNA polymerase epsilon catalytic subunit | 56 | 227 | - | - | |
Sed05g1215 | 2204 | SUPERFAMILY | Ribonuclease H-like | 66 | 467 | IPR012337 | - | |
Sed05g1215 | 2204 | SMART | DUF1744_2 | 1510 | 1895 | IPR013697 | GO:0003887(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0008270(InterPro) | |
Sed05g1215 | 2204 | Pfam | Domain of unknown function (DUF1744) | 1522 | 1895 | IPR013697 | GO:0003887(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0008270(InterPro) | |
Sed05g1215 | 2204 | SMART | polmehr3 | 239 | 842 | IPR006172 | GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro) | |
Sed05g1215 | 2204 | Pfam | Zinc finger domain of DNA polymerase-epsilon | 2140 | 2201 | IPR054475 | - | |
Sed05g1215 | 2204 | Pfam | DNA polymerase family B, exonuclease domain | 194 | 400 | IPR006133 | - | |
Sed05g1215 | 2204 | PANTHER | DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A | 4 | 2165 | IPR029703 | GO:0000278(PANTHER)|GO:0003677(PANTHER)|GO:0003677(InterPro)|GO:0003887(InterPro)|GO:0003887(PANTHER)|GO:0006260(InterPro)|GO:0006272(PANTHER)|GO:0006281(InterPro)|GO:0006287(PANTHER)|GO:0006297(PANTHER)|GO:0008310(PANTHER)|GO:0008622(PANTHER)|GO:0008622(InterPro)|GO:0045004(PANTHER) | |
Sed05g1215 | 2204 | FunFam | DNA polymerase epsilon catalytic subunit | 756 | 936 | - | - | |
Sed05g1215 | 2204 | Pfam | DNA polymerase epsilon catalytic subunit A, thumb domain | 945 | 1120 | - | - | |
Sed05g1215 | 2204 | Gene3D | Palm domain of DNA polymerase | 752 | 936 | IPR023211 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed05g1212 | Sed-Chr5:19834976 | Sed05g1215 | Sed-Chr5:19834976 | 0.00E+00 | dispersed | |
Sed05g1213 | Sed-Chr5:19834976 | Sed05g1215 | Sed-Chr5:19834976 | 0.00E+00 | dispersed | |
Sed05g1214 | Sed-Chr5:19834976 | Sed05g1215 | Sed-Chr5:19834976 | 0.00E+00 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed05g1215 | K02324 | - | csv:101208568 | 4066.92 |