Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1269 ATGTCGGTGCCTGCGGCTTCCGTCGCTGCGGGTATATTGAAACAGGTCTCTTGCCGATTCCCAAAGCGGTTCGTTTTATTATGGTTTGTGATTTCCTTCACCAATGCCTTTGTACCCGATATACCAGCAGCACCTTTGCTTGCACCTGCTATTCACGATATGCCTTTTCCTGCCAAATTGCCACTTCACCAACACCACCGAAAGTATATGCCACCACAAAGTACACCAGCAGCTGGACTAGCACCGGCATCGCCTCCTTACTATGGGCCTCTTATCACTTTTGGTCATCCACCCGCAAGCTCAAGTCTTTCAAACCCTTTGATGAAGAGTGGATCAGCTCCTCCTGGTGGTAGGCTCGAAAACATTGCTCCCATACAGTCCAGTGCCGGTGCTATTCCCTCTGGATTACCTCAGCCACCACTCTCTCCTAATGCAGCCGACTGTTGCAAACCTGACATGGTGCTTAAACGAGGGAGTGATGATGACTGCCATTGTGTCTATCCCATTAAAATTGATCTCCTCCTCTTAAATGTATCACAGAATCCCAATTGGAAACTTTTTCTTGAAGAGTTAGCTTCAGAACTTGATTTACAAGCCTCTCAGATTGAGCTGATTAACTTTTATGTACTTAGTTTATCAAGATTAAATATCTCAATGGACATTACTCCACATGCTGGGATCAGCTTCTCTGCAGTTGAAGCATCCGCAATAAGCTCTTCACTTGCAATGCATAAGGTTCATCTAGACCCTACACTGGTTGGTGATTACACTCTTCTCAATTTCACCTGGTTCAAGCCTCCGCCTTCTTCTCAAGCTCCTATAGCTTCTGCATCACCTGTAGCTGCTCCAGCATATCATATTCCAGCCTCAACATCTCTGAGTCCTTCTAGCAAAGGACACCACTCCAATCTGACACTTCTTCTTGGTATCGGTGCTGGTCTTCTTTTCGTTGCAATTCTATTTGTGTTGATAATTTGTCTATGCACATCTCATCGTGGGAAGGCTGAAGCACCACCTCCATTAGTAGCCGAAAAACCGAGGGTTGAGGACAAAGTGTCCGGCGTAGGATCTTTCCCTCATCCATCAAGTATGAGATTTCTAACTTATGAGGAGCTTAAAGAAGCAACTAATAACTTTGAAGAAGCAAGCATACTGGGGGAGGGTGGTTTTGGCCAGGTTTTTAAGGGCGTCTTAAGTGATGGCACAGCTGTTGCGATCAAGAGGCTTACAAGTGGAGGGCAACAAGGAAACAAGGAGTTTTTGGTTGAGGTTGATATGCTTAGCCGGTTGCATCACCGAAATCTTGTTAAACTTATTGGCTACTATAGTAACCACGACTCTTCACAAAACCTTCTATGCTATGAACTTGTTCCAAATGGAAGCTTGGAGGCCTGGCTTCATGGTCCTCTAGGTGTTAATTGTCCTTTGGATTGGGACACCAGAATGAAGATTGCACTAGATGCTGCTCGAGGACTTGCTTACCTTCATGAAGACTCACAACCTTGTGTCATCCACAGAGACTTTAAGGCATCAAATATATTGCTTGAGAACAACTTCCATGCTAAAGTTGCCGACTTCGGCCTTGCTAAACAAGCTCCTGAAGGCAGAGCTAATTACCTCTCTACTCGTGTGATGGGCACATTTGGTTATGTCGCCCCCGAGTATGCAATGACTGGTCATCTACTCGTCAAGAGTGATGTCTATAGCTACGGAGTTGTTCTTCTCGAGTTGTTCACTGGAAGGAAACCTGTAGATATGTCACAACCATCAGGGCAAGAGAACCTTGTCACATGGGCTAGGCCGATTTTGAGAGATAAGGATCGGTTGGAAGAACTTGCTGATCCACAACTTGGAGGGAAGTATCCAAAGGAAGATTTCGTACCGGTGTGTACCATTGCAGCAGCCTGCGTCGCTCCAGAGGCTGGCCAACGGCCAACTATGGGTGAAGTTGTACAGTCTCTTAAAATGGTGCAACGTGTTACCGAGTACCAAGATTCTGTGGTACCATCCTCCAACAACCAAACTAATCTTAAACAGTCCTCCACGACATTCGAGTCTGATGGATCCTCTTCAATGTTCTCATCTGGTCCTTATTCTGGTTTGAGCGGTTTTGACAACGACAATGTATCTCGGACAGCAATTTTCTCCGAAGATCTTCACGAGGGACGATGA 2172 45.81 MSVPAASVAAGILKQVSCRFPKRFVLLWFVISFTNAFVPDIPAAPLLAPAIHDMPFPAKLPLHQHHRKYMPPQSTPAAGLAPASPPYYGPLITFGHPPASSSLSNPLMKSGSAPPGGRLENIAPIQSSAGAIPSGLPQPPLSPNAADCCKPDMVLKRGSDDDCHCVYPIKIDLLLLNVSQNPNWKLFLEELASELDLQASQIELINFYVLSLSRLNISMDITPHAGISFSAVEASAISSSLAMHKVHLDPTLVGDYTLLNFTWFKPPPSSQAPIASASPVAAPAYHIPASTSLSPSSKGHHSNLTLLLGIGAGLLFVAILFVLIICLCTSHRGKAEAPPPLVAEKPRVEDKVSGVGSFPHPSSMRFLTYEELKEATNNFEEASILGEGGFGQVFKGVLSDGTAVAIKRLTSGGQQGNKEFLVEVDMLSRLHHRNLVKLIGYYSNHDSSQNLLCYELVPNGSLEAWLHGPLGVNCPLDWDTRMKIALDAARGLAYLHEDSQPCVIHRDFKASNILLENNFHAKVADFGLAKQAPEGRANYLSTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELFTGRKPVDMSQPSGQENLVTWARPILRDKDRLEELADPQLGGKYPKEDFVPVCTIAAACVAPEAGQRPTMGEVVQSLKMVQRVTEYQDSVVPSSNNQTNLKQSSTTFESDGSSSMFSSGPYSGLSGFDNDNVSRTAIFSEDLHEGR 723
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23643878 23649303 - Sed0008873.1 Sed05g1269 713895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1269 723 FunFam Receptor-like serine/threonine-protein kinase ALE2 457 675 - -
Sed05g1269 723 MobiDBLite consensus disorder prediction 665 703 - -
Sed05g1269 723 Gene3D Phosphorylase Kinase; domain 1 356 456 - -
Sed05g1269 723 ProSitePatterns Protein kinases ATP-binding region signature. 385 407 IPR017441 GO:0005524(InterPro)
Sed05g1269 723 ProSitePatterns Serine/Threonine protein kinases active-site signature. 503 515 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g1269 723 SUPERFAMILY Protein kinase-like (PK-like) 353 656 IPR011009 -
Sed05g1269 723 ProSiteProfiles Protein kinase domain profile. 379 657 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g1269 723 FunFam Receptor-like serine/threonine-protein kinase ALE2 359 456 - -
Sed05g1269 723 PANTHER OS01G0750732 PROTEIN 147 696 IPR050885 -
Sed05g1269 723 Gene3D Transferase(Phosphotransferase) domain 1 457 680 - -
Sed05g1269 723 Pfam Protein tyrosine and serine/threonine kinase 383 654 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1269 Sed-Chr5:23643878 Sed07g1324 Sed-Chr7:10123823 9.90E-102 dispersed
Sed12g1763 Sed-Chr12:28729590 Sed05g1269 Sed-Chr5:23643878 1.60E-58 dispersed
Sed14g0001 Sed-Chr14:105963 Sed05g1269 Sed-Chr5:23643878 5.40E-16 dispersed
Sed05g1269 Sed-Chr5:23643878 Sed06g1229 Sed-Chr6:35736122 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79155 PF07714 PK_Tyr_Ser-Thr 2.80E-44 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1269 - - - 0.0