Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1272 ATGGAAGATCCTACCACAAGCAGCGGCGGTGGAGACGGCGGCGGCGCTGGTGGATATTTAGCATTTTCCGGTTTGTTGGATTTTAGTGATGGCCACAAATGCTCTGTTGGGTTCATGGAGCTGCTTGGGCTCAATAATAATGATAAAAATGATGAATTTAAGGATTACAATTCTGAGGTTTTGAATTCTCCGGCCACCCCTAATTCCTCCTCCGTTTCTTCCGCCTCTAACCTCAACGACGACCCCTCCGCCGCCGCCACCGCCGATCATGATCAACAACCACACAAGCCCACTAAACAGTTGAAGGTGAAGAAGAGGAAGGGGAAGAGGGAAAAGGAGGCAAGATTTGCATTCATGACAAAGAGTGAGGTAGATCATCTAGAAGATGGGTATAGATGGAGAAAGTATGGCCAAAAAGCTGTCAAAAACAGTCCTTTTCCTAGGAGCTACTATCGTTGCACTAGTGCAGCCTGTAATGTAAAGAAGCGAGTTGAACGCTCTTTTGCTGATCCAACCGTGGTCGTGACCACCTATGAAGGTCAACACACTCACCCGAGCCCAATCCTCACTCGGTCAACCTTAGCCCTTGCTGTTCTGCCTCCTCCCTTCGCCAGTGTGTCGGGAGGAGGGTGTACCAGCATCATGGCCATGCCATGGCTCAAAGCTAGCAACAACACTCACGGAGACAACTTTCGAGCAACATCGACTCCCCAATTCTACCAAAACCCGACCTTCTTCACCTCCCAACATTTAAACGATGATTGCAATCGCAACCTTATCGGACCAGCGAACGTGGCTGGATTCCTTCAGGAGAAACGATTCTGCAATCAAAATCCTGCTTTGATTGCAGACCATGGACTACTTCAAGATGTTGTTCCTCCACACATGCTGAAACAGGAGTAA 903 48.73 MEDPTTSSGGGDGGGAGGYLAFSGLLDFSDGHKCSVGFMELLGLNNNDKNDEFKDYNSEVLNSPATPNSSSVSSASNLNDDPSAAATADHDQQPHKPTKQLKVKKRKGKREKEARFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTSAACNVKKRVERSFADPTVVVTTYEGQHTHPSPILTRSTLALAVLPPPFASVSGGGCTSIMAMPWLKASNNTHGDNFRATSTPQFYQNPTFFTSQHLNDDCNRNLIGPANVAGFLQEKRFCNQNPALIADHGLLQDVVPPHMLKQE 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23853056 23856511 + Sed0020553.1 Sed05g1272 713898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1272 300 FunFam WRKY transcription factor 57 113 187 - -
Sed05g1272 300 Pfam WRKY DNA -binding domain 128 185 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed05g1272 300 Gene3D WRKY domain 112 188 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed05g1272 300 ProSiteProfiles WRKY domain profile. 122 187 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed05g1272 300 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 56 216 IPR044810 GO:0003700(InterPro)
Sed05g1272 300 MobiDBLite consensus disorder prediction 58 112 - -
Sed05g1272 300 SUPERFAMILY WRKY DNA-binding domain 119 187 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed05g1272 300 MobiDBLite consensus disorder prediction 58 83 - -
Sed05g1272 300 SMART WRKY_cls 127 186 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1129 Sed-Chr2:48492949 Sed05g1272 Sed-Chr5:23853056 1.20E-40 dispersed
Sed03g2583 Sed-Chr3:41279511 Sed05g1272 Sed-Chr5:23853056 2.40E-36 dispersed
Sed05g1272 Sed-Chr5:23853056 Sed12g0763 Sed-Chr12:4605024 3.00E-44 dispersed
Sed05g1272 Sed-Chr5:23853056 Sed09g1307 Sed-Chr9:37187546 5.30E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38518 PF03106 WRKY 2.40E-26 CL0274 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1272 - - - 0.0