Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1284 ATGGAGGAAACTTTTGTTCCTTTTCGTGGTATAAGAAATGATTTGAAAGGGAGGTTAGTGTGCTACAAACAAGACTGGACTAGTGGATTGAGAGCTGGATATAGGATTTTGGCTCCCACCACTTACATATTCTTTGCCTCTGCAATTCCTGTCATTTCATTTGGTGAACAGTTGGAGAGAAGTACTGATGGGGTTCTGACTGCAGTTCAAACCTTAGCCTCCACAGCTCTTTGTGGGATTATTCATTCCATTATTGGAGGTCAACCTTTGCTCATCTTGGGAGTTGCTGAGCCAACTGTTATTATGTACACCTTCATGTTTAATTTTGCAAAGGAACGACCCGAGTTGGGTCGGAATCTGTTTCTAGCATGGAGTGGATGGGTGTGTGTTTGGACTGCAGCCTTGCTGTTCTTAATGGCTATACTAGGAGCTTGTTCCATTATCAATAGGTTCACTCGTCTGGCTGGGGAATTGTTTGGTTTGCTTATCGCGATGCTTTTCATGCAGGAAGCTATCAAAGGACTTGTGGATGAGTTTCGTATCCCAGAACGGGAAAATACGAAATTGATCGAGTTTATACCTTCTTGGAGGTTTGCCAATGGGATGTTTGCTCTGGTGCTGTCATTTGGCCTTCTACTCACTGCTTTAAGGAGTCGAAAAGCACGGTCATGGCGATATGGATCTGGTTGGCTTAGAAGCTTGATAGCAGACTATGGAGTTCCACTCATGGTTCTTGTTTGGACAGGTATATCCTATATACCTTCAAAAAGTATCCCACAAGGTATCCCAAGGAGACTCTTCAGCCCGAATCCATGGTCGCCCGGTGCGTACGAAAATTGGACTGTTATTAAGGATATGCTTGACGTTCCAGTTTTTTATATCTGTGGAGCTTTCATCCCGGCTACGATGATTGCTGTGCTGTACTATTTCGACCATAGTGTTGCATCTCAACTTGCTCAGCAGAAAGAGTTCAATTTAAGGAAGCCATCATCTTACCATTATGATTTACTTCTATTGGGATTCTTGACCTTAATATGTGGTCTTCTTGGAATTCCTCCATCTAATGGAGTAATCCCACAATCTCCGATGCATACAAAGAGCCTGGCTACCCTCAAACACCAGTTGCTCCGGAATAAACTTGTAGCAACAGCACGGAGTAGTATGAGAAAGAATGCAAGCTTGGGACAGTTGTATGGAAGTATGCAAGAAGCATACAATCAAATGCAGACCCCCTTGATCTACCAACAGCCTGCAGCTCGTGGACTGAATGAGCTAAAAGAGACAACCATTCAAGCAGCTTCTAGTATGGGAAGTTTTGATGCTCCGGTCGATGAGACAATATTCGACATCGAAAAGGAAATTGATGATCTATTGCCTGTTGAAGTGAAAGAACAGCGCGTGAGTAATTTGCTTCAAGCTGCAATGGTGGGAGGATGCGTTGCTGCCATGCCCGTCCTCAAAAAGATCCCGACCTCGGTTTTATGGGGTTACTTTGCTTTTATGGCCATCGAAAGCTTGCCTGGTAACCAGTTTTGGGAAAGAATCTTGTTGCTATTCACTGCACCCAGCAGAAGATACAAAGTTCTTGAGGATTACCACGCGACTTTCGTTGAGACCGTGCCATTCAAATCCATTGCTGTTTTTACGATTTTCCAAACTGTATATTTGTTCATATGTTTTGGACTAACATGGGTTCCAATTGCTGGGGTTATGTTTCCTCTGATGATCATGCTCCTCGTCCCCATACGACAATATCTTCTTCCCAAGTTCTTCAAAGGTGCACATCTCCAAGATCTCGATGCAGCTGAATTCGAAGAAGCACCAGCTTTACCATTCAATCTTGCAACGGAAGCCGAGCTGGGTGCTGGAGCCTCATTTGGTGGGGATGGAGAGATCTTAGATGGGGTTATCACCCGAAGCCGTGGTGAGTTTAGGCATATTAGTAGTCCTAAGATCACAAGCTCCACGGCAACACCATTATGTGAACGAAAAAGTTTCGACAGTCATCGTTCTTTTAGCCCTCGGGTGAGCGAGCTAAGAGGAGAGCTCAGTCCTCGAGCTGGGGGACGAGGGACACCGGGCCAGAGAAGTGCAGAAGCCAAACCATCCAGTCTTGGAAAGAGCCCTCTTAATAACGATACAGCATCAAATTAG 2154 44.8 MEETFVPFRGIRNDLKGRLVCYKQDWTSGLRAGYRILAPTTYIFFASAIPVISFGEQLERSTDGVLTAVQTLASTALCGIIHSIIGGQPLLILGVAEPTVIMYTFMFNFAKERPELGRNLFLAWSGWVCVWTAALLFLMAILGACSIINRFTRLAGELFGLLIAMLFMQEAIKGLVDEFRIPERENTKLIEFIPSWRFANGMFALVLSFGLLLTALRSRKARSWRYGSGWLRSLIADYGVPLMVLVWTGISYIPSKSIPQGIPRRLFSPNPWSPGAYENWTVIKDMLDVPVFYICGAFIPATMIAVLYYFDHSVASQLAQQKEFNLRKPSSYHYDLLLLGFLTLICGLLGIPPSNGVIPQSPMHTKSLATLKHQLLRNKLVATARSSMRKNASLGQLYGSMQEAYNQMQTPLIYQQPAARGLNELKETTIQAASSMGSFDAPVDETIFDIEKEIDDLLPVEVKEQRVSNLLQAAMVGGCVAAMPVLKKIPTSVLWGYFAFMAIESLPGNQFWERILLLFTAPSRRYKVLEDYHATFVETVPFKSIAVFTIFQTVYLFICFGLTWVPIAGVMFPLMIMLLVPIRQYLLPKFFKGAHLQDLDAAEFEEAPALPFNLATEAELGAGASFGGDGEILDGVITRSRGEFRHISSPKITSSTATPLCERKSFDSHRSFSPRVSELRGELSPRAGGRGTPGQRSAEAKPSSLGKSPLNNDTASN 717
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24556326 24561369 + Sed0007133.1 Sed05g1284 713910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1284 717 MobiDBLite consensus disorder prediction 658 717 - -
Sed05g1284 717 Pfam HCO3- transporter integral membrane domain 460 602 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Sed05g1284 717 Pfam HCO3- transporter integral membrane domain 7 180 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Sed05g1284 717 Pfam HCO3- transporter integral membrane domain 200 372 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
Sed05g1284 717 PANTHER ANION EXCHANGE PROTEIN 4 638 IPR003020 GO:0005452(InterPro)|GO:0005886(PANTHER)|GO:0006820(InterPro)|GO:0016020(InterPro)|GO:0022857(PANTHER)|GO:0046715(PANTHER)|GO:0050801(PANTHER)|GO:0055085(PANTHER)
Sed05g1284 717 Gene3D Helical hairpin bin 18 60 - -
Sed05g1284 717 MobiDBLite consensus disorder prediction 697 717 - -
Sed05g1284 717 FunFam probable boron transporter 2 18 60 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1656 Sed-Chr1:12020368 Sed05g1284 Sed-Chr5:24556326 0.00E+00 dispersed
Sed01g1657 Sed-Chr1:12020368 Sed05g1284 Sed-Chr5:24556326 0.00E+00 dispersed
Sed05g1284 Sed-Chr5:24556326 Sed06g1218 Sed-Chr6:35437882 2.40E-297 dispersed
Sed05g1284 Sed-Chr5:24556326 Sed06g1217 Sed-Chr6:35437882 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1284 K24194 - csv:101205388 1341.64