Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1288 ATGGTGGAATGGAAGGGATTTTGGATAAGTTGGAGAAAAACAAGAAAAAACATTAATTTCAATGGGAGAGTGTCGATGAGGAAATCCGGAAAGCCAGCATCTTCCTCAGGCAGCCCATGGTATGGCCCTGACCGTGTTAAGTACCTTGGACCATTCTCTGGCGAGTCTCCATCTTACCTCAAAGGAGAATTCCCTGGTGATTATGGTTGGGACACTGCAGGCTTATCCGCCGACCCCGAGACTAGATGGGCCATGCTTGGTGCTCTAGGATGTGTGTTCCCAGAGCTTCTTTCCAGGAATGGAGTCAAGTTTGGTGAAGCAGTTTGGTTTAAGGCTGGTTCACAAATCTTCAGTGAGGGTGGGCTTGACTATCTTGGAAACCCAAGTCTTGTTCATGCACAAAGCATTTTGGCCATTTGGGCATCCCAAGTTGTGCTTATGAGTGCAGTTGAAGGTTATCGTATTGCGGGAGGTCCTCTCGGAGAAATTACCGATCCCATATACCCAGGTGGAAGCTTTGATCCCCTCGGGTTGGCTGATGATCCAGACGCATTTGCAGAGCTTAAGGTGAAAGAACTTAAGAATGGCCGTCTTGCTATGTTTTCTATGTTTGGATTCTTCGTGCAGGCGATTGTAACAGGAAAAGGTCCTTTGGAGAACCTTGCTGATCATCTTGCTGATCCTGTCAACAACAATGCTTGGTCTTATGCTACCAACTTTGTACCTGGGAAGTGA 735 47.07 MVEWKGFWISWRKTRKNINFNGRVSMRKSGKPASSSGSPWYGPDRVKYLGPFSGESPSYLKGEFPGDYGWDTAGLSADPETRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWASQVVLMSAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24810107 24811998 - Sed0011505.1 Sed05g1288 713914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1288 244 FunFam Chlorophyll a-b binding protein, chloroplastic 47 237 - -
Sed05g1288 244 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 20 244 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Sed05g1288 244 Pfam Chlorophyll A-B binding protein 57 211 IPR022796 -
Sed05g1288 244 SUPERFAMILY Chlorophyll a-b binding protein 39 241 - -
Sed05g1288 244 Gene3D Chlorophyll a/b binding protein domain 47 237 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1288 Sed-Chr5:24810107 Sed10g0155 Sed-Chr10:959200 1.50E-123 dispersed
Sed05g1288 Sed-Chr5:24810107 Sed05g1289 Sed-Chr5:24813832 1.60E-128 tandem
Sed05g1288 Sed-Chr5:24810107 Sed06g1212 Sed-Chr6:35380465 8.20E-117 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1288 K08912 - csv:101203342 441.425