Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1289 ATGGAGACCTTTCTATTTACCTCTGAGTCTGTGAACGAGGGCCACCCAGACAAGCTCTGTGACCAGATCTCGGATGCAGTTCTTGATGCTTGCCTTGTTCAAGACCCCGACAGCAAGGTTGCTTGTGAGACTTGCACCAAGACCAATATGGTTATGGTTTTTGGAGAGATTACAACCAAGGCCGATGTGGACTACGAGAAGATTGTCCGAGATACTTGCCGTTCGATCGGATTCAACTCGGATGATGTGGGTCTTGATGCTGACAACTGCAAGGTCCTAGTCAACATTGAGCAACAGAGTCCTGATATTGCCCAAGGTGTCCATGGCCATTTCACGAAGCGACCTGAGGACATTGGTGCTGGCGACCAGGGTCACATGTTTGGCTATGCCACAGATGAGACCCCAGAACTTATGCCCCTTAGTCATGTTCTTGCAACAAAGCTCGGCGCTCGCCTAACAGAAGTGAGAAAGAATGGTACCTGCCCATGGTTGAGACCGGATGGTAAGACCCAAGTTACTGTGGAGTACTACAATGATAATGGCATGGCAGCCATGACTCTCTCATCCACCTTCACTGGAAAAGCAGTTCCTTTGACTGCACCGACCGAGCAGTTTTCCTCGGTTCGCAGCAATGGGAGAGTGTCGATGAGGAAATCCGGAAAGCCAGCATCTTCCTCAGGCAGCCCATGGTATGGCCCCGACCGTGTTAAGTACCTTGGACCATTCTCTGGCGAGTCTCCATCTTACCTCAAAGGAGAATTCCCTGGTGATTATGGTTGGGACACTGCAGGCTTATCCGCCGACCCCGAGACGTTTGCTAAGAACCGAGAGCTCGAAGTGATTCACAGTAGATGGGCCATGCTTGGTGCTCTAGGATGTGTGTTCCCAGAGCTTCTTTCCAGGAATGGAGTCAAGTTTGGTGAAGCAGTTTGGTTTAAGGCTGGTTCACAAATCTTCAGTGAGGGTGGGCTTGACTATCTTGGAAACCCAAGTCTTGTTCATGCACAAAGCATTTTGGCCATTTGGGCATCCCAAGTTGTGCTTATGGGTGCAGTTGAAGGTTATCGTATTGCGGGAGGTCCTCTCGGAGAAATTACCGATCCCATATACCCAGGTGGAAGCTTTGATCCCCTCGGGTTGGCTGATGATCCAGACGCATTTGCAGAGCTTAAGGTGAAAGAACTTAAGAATGGCCGTCTTGCTATGTTTTCTATGTTTGGATTCTTCGTGCAGGCGATTGTAACAGGAAAAGGACCTTTGGAGAATCTTGCCGATCATCTCGCTGATCCTGTCAACAACAATGCATGGTCTTATGCTACAAACTTTGTACCTGGGAAGTGA 1341 49.37 METFLFTSESVNEGHPDKLCDQISDAVLDACLVQDPDSKVACETCTKTNMVMVFGEITTKADVDYEKIVRDTCRSIGFNSDDVGLDADNCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETPELMPLSHVLATKLGARLTEVRKNGTCPWLRPDGKTQVTVEYYNDNGMAAMTLSSTFTGKAVPLTAPTEQFSSVRSNGRVSMRKSGKPASSSGSPWYGPDRVKYLGPFSGESPSYLKGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWASQVVLMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24813832 24823607 - Sed0019531.1 Sed05g1289 713915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1289 446 Pfam S-adenosylmethionine synthetase, N-terminal domain 4 101 IPR022628 GO:0004478(InterPro)|GO:0006556(InterPro)
Sed05g1289 446 SUPERFAMILY S-adenosylmethionine synthetase 115 182 IPR022636 GO:0004478(InterPro)|GO:0006556(InterPro)
Sed05g1289 446 Gene3D - 13 112 - -
Sed05g1289 446 SUPERFAMILY S-adenosylmethionine synthetase 3 109 IPR022636 GO:0004478(InterPro)|GO:0006556(InterPro)
Sed05g1289 446 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 185 446 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Sed05g1289 446 FunFam Chlorophyll a-b binding protein, chloroplastic 237 439 - -
Sed05g1289 446 MobiDBLite consensus disorder prediction 207 228 - -
Sed05g1289 446 FunFam S-adenosylmethionine synthase 11 126 - -
Sed05g1289 446 Gene3D - 119 195 - -
Sed05g1289 446 SUPERFAMILY Chlorophyll a-b binding protein 229 443 - -
Sed05g1289 446 MobiDBLite consensus disorder prediction 207 226 - -
Sed05g1289 446 Pfam Chlorophyll A-B binding protein 247 413 IPR022796 -
Sed05g1289 446 Pfam S-adenosylmethionine synthetase, central domain 118 179 IPR022629 GO:0004478(InterPro)|GO:0006556(InterPro)
Sed05g1289 446 ProSitePatterns S-adenosylmethionine synthase signature 1. 119 129 IPR022631 GO:0004478(InterPro)|GO:0006556(InterPro)
Sed05g1289 446 Gene3D Chlorophyll a/b binding protein domain 237 439 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1289 Sed-Chr5:24813832 Sed10g0157 Sed-Chr10:965751 2.70E-134 dispersed
Sed05g1288 Sed-Chr5:24810107 Sed05g1289 Sed-Chr5:24813832 1.60E-128 tandem
Sed05g1289 Sed-Chr5:24813832 Sed06g1211 Sed-Chr6:35373964 5.20E-101 wgd
Sed05g1289 Sed-Chr5:24813832 Sed07g0615 Sed-Chr7:4655784 4.40E-100 wgd
Sed05g1289 Sed-Chr5:24813832 Sed09g1335 Sed-Chr9:37462203 2.20E-99 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1289 K08912 - csv:101203342 513.072