Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1290 ATGGAGGCTGGATATGGAGGTGAAGCTTGTCAATTGTATGGTATGGGATCTATGGACTTGAGGGCTGCTGTGGGTAAGAGGAGTTTCGAATGGGATTTGAATGATTGGAAATGGGATGGAGATCTCTTTATTGCTAGGCCTTTGAATACCATGGAATCTGATCATTTGAGCAGGCAGCTTTTTCCAATCGTCTCTGGGATTCCCCTCACCGGTGGGGGTTCGTCGAACAGCTCCTCGTCCTGCTCCGAGGAAGCTAATATGGGGATTGAGAAAGGGAAAAGGGAAGTGGAGAAGAGGAGGAGGGTTACTGTTGTTGAAGATGGGAATCTTAATGATGAAGCTCGTGCTTTGAGTTTGAAGGTTGGTGGAAATGGTTCTCAGATTGTCGAGAGGGAAGCAGGGAATTGGGAAGGAACTAGTGGGAAGAAGACTAAATTGACTGGGGGGAATTCGAATCGTGCCGTTTGCCAAGTGGAGGACTGTGGAGCAGATCTGAGCAATGCTAAAGATTATCACCGACGACATAAAGTCTGCGAAACACATTCTAAGGCGAGTAATGCCCTCGTTGCAAATGTTTTGCAGCGATTCTGCCAACAATGTAGCAGGTTCCATGTTCTTCAAGAGTTTGATGAAGGGAAACGAAGTTGTCGTAGACGTTTGGCTGGCCATAACAAGCGAAGAAGAAAAATTAATCCAGATAATGCTGTTAATGGAAATTCTCCACCTGATGAGCAAACTAGTAACTATTTGTTGTTAACTCTGTTGCGGTTACTTGCAAATTTACACTCCAATGGTTCAAATCAGACCACAGATCAGGATCTTCTTTCTCATCTTATAAGAAGCCTTGCCTGTCAATCTAGTGAGCATGAGGGAAAGAATTTATCTGGGATTCTACTTGAACCCCAGAAATTGCAGAACAATGGGTCATCAATTGGGAAATCAGATCTAGTTTCTACTTTTCTCTCAAATAGTTCTCAGGTACCTAAAAGACCTTCTAAACAACATGACGGGATACCGATATCTAAGACACCAGTACAAGCAATTGTTAGGGGTGGAGATGCACCAGCTTTATCTTCTATAAAGCCAAGCACTTCAAACAGCCCTCCCACTTATTTAGAAATCAGGGACAGTACGGTTGGGCAATGCAAAATGATGAACTTTGATTTGAACGATGCTTATGTTGACTCGGATGATGGCATGGAAGACATTGAGAGACAAGCACTCCCAGTGCACATGGGAACAAGTTCTCTTGAATGTCCTTCTTGGGTGCAACAAGGCTCTCAACAGTCAAGCCCCCCTCAAACTAGTAGAAATTCAGATTCAGCATCTGCCCAGTCACCTTCTAGCTCTGCTGGAGAAGTTCAGAACCGTACTGATCGCATCATTTTGAAGTTGTTTGGGAAAGCACCAAATGATTTTCCTCACGTTTTGCGAGCTCAGGTTCTTGATTGGTTATCACACAGTCCCACAGAGATAGAGAGCTATATCAGGCCTGGTTGTGTTGTTCTAACTATATACCTCCGACAGACTGAGGCTGCATGGGATGATCTTTGCGATGACCTCAGTACCAGTTTGAATAGGCTTCTTGATGTTTCCAGTGATGCATTCTGGAGAACGGGATGGGTTTACATGCGGGTTCAGCATCAAATAGCCTTCGTTTATCATGGTCAGGTTGTAGTTGACACATCCTTGCCTCTTAGAAACATGAATTACTCTAGAATCACAAGTGTAAACCCAGTTGCCGTTTCTATATCGAAGAAGGCTATATTTTCAGTTAAAGGAATAAACTTGAGCCGACCTACAACTAGGTTACTCTGTGCTATTGAAGGAAAATATTTAACTCAGGAAGCTTCAGATGAGTCAACAGAAACTGGTGATGAGTTGAAGGTGCAAGATGACAGCCAATGCGTTACCTTTTCTTGCTCTATTCCTGTCGTCCATGGAAGAGGATTCATTGAGGTTGAAGATGATGGTTTCAGCAGCTGTTTCTTTCCTTTTATAGTTGCAGAGGAGGATGTTTGTACAGAAATCTGCACACTTCAGAGTGCTTTAGAATTTACTGAAATGTGTTCAAATTCCGGGGAAACTGCAGAGCTGGAAGGACGGAGTAATGCAATGGAGTTTATTCACGAAATCGGTTGGCTGTTTCATAGAAATCAATTGAAGTGTAGATTAGGTCCCTTGGATCCTAATAAAAATCTATTTTCACTGCCACGGTTCAAGTGGCTCATGGAGTTCTCGATGGATCATGATTGGCGTGCTGTGGTTAAAAAGCTGTTAGATGTTCTTCTCGATGGGACTGTGGATGCAGGAGATTACCCATCCTTGAATTTCGCATTGATGGAAATGAACTTACTTCACCGAGCAGTTAGAAAAAACAGTAGATCACTGGTTGAGCTCCTTTTGAGATATCCATCAAAAGTGAAGGATACCTCAAGTTCTGAAGACAATGCATCAATTGATGGAGAGACCAGTAGCAGCTTCCTGTTCAGACCGGATGTCGTAGGCCCGGCCGGTTTGACCCCTCTTCACATTGCAGCTGGTAAAGATGACTCCGAGGATGTTCTTGATGCATTAACTAATGACCCGGGGGTGGTGGGAGTTGAGGCTTGGAAGAGTGCTCGAGACAGCACCGGCTCGACGCCTGAGGATTATGCCCGTTTGCGTGGCCATTACTCTTATATTCGTCTTGTCCAGAGGAAAATCAACAAGAGATCGGCTGGGCATGTAGTTTTGGACATTCCTAGTACTCTCCCAGATGGTAGTTGGAATAAGAAGCAGAACTCTGATTTGACCTCCGCCAGGTTTGAGATTGGTAAGACAGAGCTGAAACCTACTCAGCAGCATTGTAGTCTCTGTGTCAGGAAACCGCTCAATTGTGGAACGTCGTCTAGAGCATCTATGCTCTACCGGCCCGCAATGCTCTCAATGGTGGCCATTGCTGCTGTCTGTGTGTGTGTGGCACTCCTATTCAAAAGCTCGCCCGAGGTTCTCTATGTCTTCCGCCCCTTCCGATGGGAACTATTAAATTACGGTACTAGTTAG 3045 44.56 MEAGYGGEACQLYGMGSMDLRAAVGKRSFEWDLNDWKWDGDLFIARPLNTMESDHLSRQLFPIVSGIPLTGGGSSNSSSSCSEEANMGIEKGKREVEKRRRVTVVEDGNLNDEARALSLKVGGNGSQIVEREAGNWEGTSGKKTKLTGGNSNRAVCQVEDCGADLSNAKDYHRRHKVCETHSKASNALVANVLQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKINPDNAVNGNSPPDEQTSNYLLLTLLRLLANLHSNGSNQTTDQDLLSHLIRSLACQSSEHEGKNLSGILLEPQKLQNNGSSIGKSDLVSTFLSNSSQVPKRPSKQHDGIPISKTPVQAIVRGGDAPALSSIKPSTSNSPPTYLEIRDSTVGQCKMMNFDLNDAYVDSDDGMEDIERQALPVHMGTSSLECPSWVQQGSQQSSPPQTSRNSDSASAQSPSSSAGEVQNRTDRIILKLFGKAPNDFPHVLRAQVLDWLSHSPTEIESYIRPGCVVLTIYLRQTEAAWDDLCDDLSTSLNRLLDVSSDAFWRTGWVYMRVQHQIAFVYHGQVVVDTSLPLRNMNYSRITSVNPVAVSISKKAIFSVKGINLSRPTTRLLCAIEGKYLTQEASDESTETGDELKVQDDSQCVTFSCSIPVVHGRGFIEVEDDGFSSCFFPFIVAEEDVCTEICTLQSALEFTEMCSNSGETAELEGRSNAMEFIHEIGWLFHRNQLKCRLGPLDPNKNLFSLPRFKWLMEFSMDHDWRAVVKKLLDVLLDGTVDAGDYPSLNFALMEMNLLHRAVRKNSRSLVELLLRYPSKVKDTSSSEDNASIDGETSSSFLFRPDVVGPAGLTPLHIAAGKDDSEDVLDALTNDPGVVGVEAWKSARDSTGSTPEDYARLRGHYSYIRLVQRKINKRSAGHVVLDIPSTLPDGSWNKKQNSDLTSARFEIGKTELKPTQQHCSLCVRKPLNCGTSSRASMLYRPAMLSMVAIAAVCVCVALLFKSSPEVLYVFRPFRWELLNYGTS 1014
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24873726 24881471 - Sed0026865.1 Sed05g1290 713916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1290 1014 SUPERFAMILY SBT domain 154 235 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed05g1290 1014 MobiDBLite consensus disorder prediction 419 454 - -
Sed05g1290 1014 SUPERFAMILY Ankyrin repeat 782 897 IPR036770 -
Sed05g1290 1014 FunFam Squamosa promoter-binding-like protein 14 147 217 - -
Sed05g1290 1014 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 34 1011 IPR044817 GO:0003677(InterPro)
Sed05g1290 1014 MobiDBLite consensus disorder prediction 220 244 - -
Sed05g1290 1014 Gene3D - 147 217 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed05g1290 1014 SMART ANK_2a 781 810 IPR002110 GO:0005515(InterPro)
Sed05g1290 1014 SMART ANK_2a 838 868 IPR002110 GO:0005515(InterPro)
Sed05g1290 1014 SMART ANK_2a 878 907 IPR002110 GO:0005515(InterPro)
Sed05g1290 1014 Gene3D - 754 911 IPR036770 -
Sed05g1290 1014 ProSiteProfiles Zinc finger SBP-type profile. 153 230 IPR004333 GO:0003677(InterPro)
Sed05g1290 1014 Pfam SBP domain 156 229 IPR004333 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1290 Sed-Chr5:24873726 Sed12g2022 Sed-Chr12:31074482 3.50E-28 dispersed
Sed12g0874 Sed-Chr12:5428200 Sed05g1290 Sed-Chr5:24873726 2.50E-42 transposed
Sed13g1193 Sed-Chr13:16093551 Sed05g1290 Sed-Chr5:24873726 4.10E-117 transposed
Sed05g1290 Sed-Chr5:24873726 Sed06g1210 Sed-Chr6:35332529 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38520 PF03110 SBP 6.90E-30 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1290 - - - 0.0