Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1290 ATGGAGGCTGGATATGGAGGTGAAGCTTGTCAATTGTATGGTATGGGATCTATGGACTTGAGGGCTGCTGTGGGTAAGAGGAGTTTCGAATGGGATTTGAATGATTGGAAATGGGATGGAGATCTCTTTATTGCTAGGCCTTTGAATACCATGGAATCTGATCATTTGAGCAGGCAGCTTTTTCCAATCGTCTCTGGGATTCCCCTCACCGGTGGGGGTTCGTCGAACAGCTCCTCGTCCTGCTCCGAGGAAGCTAATATGGGGATTGAGAAAGGGAAAAGGGAAGTGGAGAAGAGGAGGAGGGTTACTGTTGTTGAAGATGGGAATCTTAATGATGAAGCTCGTGCTTTGAGTTTGAAGGTTGGTGGAAATGGTTCTCAGATTGTCGAGAGGGAAGCAGGGAATTGGGAAGGAACTAGTGGGAAGAAGACTAAATTGACTGGGGGGAATTCGAATCGTGCCGTTTGCCAAGTGGAGGACTGTGGAGCAGATCTGAGCAATGCTAAAGATTATCACCGACGACATAAAGTCTGCGAAACACATTCTAAGGCGAGTAATGCCCTCGTTGCAAATGTTTTGCAGCGATTCTGCCAACAATGTAGCAGGTTCCATGTTCTTCAAGAGTTTGATGAAGGGAAACGAAGTTGTCGTAGACGTTTGGCTGGCCATAACAAGCGAAGAAGAAAAATTAATCCAGATAATGCTGTTAATGGAAATTCTCCACCTGATGAGCAAACTAGTAACTATTTGTTGTTAACTCTGTTGCGGTTACTTGCAAATTTACACTCCAATGGTTCAAATCAGACCACAGATCAGGATCTTCTTTCTCATCTTATAAGAAGCCTTGCCTGTCAATCTAGTGAGCATGAGGGAAAGAATTTATCTGGGATTCTACTTGAACCCCAGAAATTGCAGAACAATGGGTCATCAATTGGGAAATCAGATCTAGTTTCTACTTTTCTCTCAAATAGTTCTCAGGTACCTAAAAGACCTTCTAAACAACATGACGGGATACCGATATCTAAGACACCAGTACAAGCAATTGTTAGGGGTGGAGATGCACCAGCTTTATCTTCTATAAAGCCAAGCACTTCAAACAGCCCTCCCACTTATTTAGAAATCAGGGACAGTACGGTTGGGCAATGCAAAATGATGAACTTTGATTTGAACGATGCTTATGTTGACTCGGATGATGGCATGGAAGACATTGAGAGACAAGCACTCCCAGTGCACATGGGAACAAGTTCTCTTGAATGTCCTTCTTGGGTGCAACAAGGCTCTCAACAGTCAAGCCCCCCTCAAACTAGTAGAAATTCAGATTCAGCATCTGCCCAGTCACCTTCTAGCTCTGCTGGAGAAGTTCAGAACCGTACTGATCGCATCATTTTGAAGTTGTTTGGGAAAGCACCAAATGATTTTCCTCACGTTTTGCGAGCTCAGGTTCTTGATTGGTTATCACACAGTCCCACAGAGATAGAGAGCTATATCAGGCCTGGTTGTGTTGTTCTAACTATATACCTCCGACAGACTGAGGCTGCATGGGATGATCTTTGCGATGACCTCAGTACCAGTTTGAATAGGCTTCTTGATGTTTCCAGTGATGCATTCTGGAGAACGGGATGGGTTTACATGCGGGTTCAGCATCAAATAGCCTTCGTTTATCATGGTCAGGTTGTAGTTGACACATCCTTGCCTCTTAGAAACATGAATTACTCTAGAATCACAAGTGTAAACCCAGTTGCCGTTTCTATATCGAAGAAGGCTATATTTTCAGTTAAAGGAATAAACTTGAGCCGACCTACAACTAGGTTACTCTGTGCTATTGAAGGAAAATATTTAACTCAGGAAGCTTCAGATGAGTCAACAGAAACTGGTGATGAGTTGAAGGTGCAAGATGACAGCCAATGCGTTACCTTTTCTTGCTCTATTCCTGTCGTCCATGGAAGAGGATTCATTGAGGTTGAAGATGATGGTTTCAGCAGCTGTTTCTTTCCTTTTATAGTTGCAGAGGAGGATGTTTGTACAGAAATCTGCACACTTCAGAGTGCTTTAGAATTTACTGAAATGTGTTCAAATTCCGGGGAAACTGCAGAGCTGGAAGGACGGAGTAATGCAATGGAGTTTATTCACGAAATCGGTTGGCTGTTTCATAGAAATCAATTGAAGTGTAGATTAGGTCCCTTGGATCCTAATAAAAATCTATTTTCACTGCCACGGTTCAAGTGGCTCATGGAGTTCTCGATGGATCATGATTGGCGTGCTGTGGTTAAAAAGCTGTTAGATGTTCTTCTCGATGGGACTGTGGATGCAGGAGATTACCCATCCTTGAATTTCGCATTGATGGAAATGAACTTACTTCACCGAGCAGTTAGAAAAAACAGTAGATCACTGGTTGAGCTCCTTTTGAGATATCCATCAAAAGTGAAGGATACCTCAAGTTCTGAAGACAATGCATCAATTGATGGAGAGACCAGTAGCAGCTTCCTGTTCAGACCGGATGTCGTAGGCCCGGCCGGTTTGACCCCTCTTCACATTGCAGCTGGTAAAGATGACTCCGAGGATGTTCTTGATGCATTAACTAATGACCCGGGGGTGGTGGGAGTTGAGGCTTGGAAGAGTGCTCGAGACAGCACCGGCTCGACGCCTGAGGATTATGCCCGTTTGCGTGGCCATTACTCTTATATTCGTCTTGTCCAGAGGAAAATCAACAAGAGATCGGCTGGGCATGTAGTTTTGGACATTCCTAGTACTCTCCCAGATGGTAGTTGGAATAAGAAGCAGAACTCTGATTTGACCTCCGCCAGGTTTGAGATTGGTAAGACAGAGCTGAAACCTACTCAGCAGCATTGTAGTCTCTGTGTCAGGAAACCGCTCAATTGTGGAACGTCGTCTAGAGCATCTATGCTCTACCGGCCCGCAATGCTCTCAATGGTGGCCATTGCTGCTGTCTGTGTGTGTGTGGCACTCCTATTCAAAAGCTCGCCCGAGGTTCTCTATGTCTTCCGCCCCTTCCGATGGGAACTATTAAATTACGGTACTAGTTAG 3045 44.56 MEAGYGGEACQLYGMGSMDLRAAVGKRSFEWDLNDWKWDGDLFIARPLNTMESDHLSRQLFPIVSGIPLTGGGSSNSSSSCSEEANMGIEKGKREVEKRRRVTVVEDGNLNDEARALSLKVGGNGSQIVEREAGNWEGTSGKKTKLTGGNSNRAVCQVEDCGADLSNAKDYHRRHKVCETHSKASNALVANVLQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKINPDNAVNGNSPPDEQTSNYLLLTLLRLLANLHSNGSNQTTDQDLLSHLIRSLACQSSEHEGKNLSGILLEPQKLQNNGSSIGKSDLVSTFLSNSSQVPKRPSKQHDGIPISKTPVQAIVRGGDAPALSSIKPSTSNSPPTYLEIRDSTVGQCKMMNFDLNDAYVDSDDGMEDIERQALPVHMGTSSLECPSWVQQGSQQSSPPQTSRNSDSASAQSPSSSAGEVQNRTDRIILKLFGKAPNDFPHVLRAQVLDWLSHSPTEIESYIRPGCVVLTIYLRQTEAAWDDLCDDLSTSLNRLLDVSSDAFWRTGWVYMRVQHQIAFVYHGQVVVDTSLPLRNMNYSRITSVNPVAVSISKKAIFSVKGINLSRPTTRLLCAIEGKYLTQEASDESTETGDELKVQDDSQCVTFSCSIPVVHGRGFIEVEDDGFSSCFFPFIVAEEDVCTEICTLQSALEFTEMCSNSGETAELEGRSNAMEFIHEIGWLFHRNQLKCRLGPLDPNKNLFSLPRFKWLMEFSMDHDWRAVVKKLLDVLLDGTVDAGDYPSLNFALMEMNLLHRAVRKNSRSLVELLLRYPSKVKDTSSSEDNASIDGETSSSFLFRPDVVGPAGLTPLHIAAGKDDSEDVLDALTNDPGVVGVEAWKSARDSTGSTPEDYARLRGHYSYIRLVQRKINKRSAGHVVLDIPSTLPDGSWNKKQNSDLTSARFEIGKTELKPTQQHCSLCVRKPLNCGTSSRASMLYRPAMLSMVAIAAVCVCVALLFKSSPEVLYVFRPFRWELLNYGTS 1014
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 24873726 24881471 - Sed0026865.1 Sed05g1290 713916

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1290 1014 SUPERFAMILY SBT domain 154 235 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed05g1290 1014 MobiDBLite consensus disorder prediction 419 454 - -
Sed05g1290 1014 SUPERFAMILY Ankyrin repeat 782 897 IPR036770 -
Sed05g1290 1014 FunFam Squamosa promoter-binding-like protein 14 147 217 - -
Sed05g1290 1014 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 34 1011 IPR044817 GO:0003677(InterPro)
Sed05g1290 1014 MobiDBLite consensus disorder prediction 220 244 - -
Sed05g1290 1014 Gene3D - 147 217 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Sed05g1290 1014 SMART ANK_2a 781 810 IPR002110 GO:0005515(InterPro)
Sed05g1290 1014 SMART ANK_2a 838 868 IPR002110 GO:0005515(InterPro)
Sed05g1290 1014 SMART ANK_2a 878 907 IPR002110 GO:0005515(InterPro)
Sed05g1290 1014 Gene3D - 754 911 IPR036770 -
Sed05g1290 1014 ProSiteProfiles Zinc finger SBP-type profile. 153 230 IPR004333 GO:0003677(InterPro)
Sed05g1290 1014 Pfam SBP domain 156 229 IPR004333 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1290 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1290 Sed-Chr5:24873726 Sed12g2022 Sed-Chr12:31074482 3.50E-28 dispersed
Sed12g0874 Sed-Chr12:5428200 Sed05g1290 Sed-Chr5:24873726 2.50E-42 transposed
Sed13g1193 Sed-Chr13:16093551 Sed05g1290 Sed-Chr5:24873726 4.10E-117 transposed
Sed05g1290 Sed-Chr5:24873726 Sed06g1210 Sed-Chr6:35332529 0.00E+00 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed05g1290 . 181 1014 SBP-box Gene Family AT2G47070 55.2 3.6e-240 828.9
Sed06g1210 . 178 1013 SBP-box Gene Family AT2G47070 55.4 7.6e-238 821.2
Sed05g1290 . 25 1014 SBP-box Gene Family AT3G60030 53.8 1.6e-274 943.3
Sed06g1210 . 25 1013 SBP-box Gene Family AT3G60030 53.9 2.9e-271 932.6
Sed09g0380 . 15 149 SBP-box Gene Family AT5G50570 58.1 1.3e-38 158.3
Sed09g0381 . 15 149 SBP-box Gene Family AT5G50570 58.1 1.3e-38 158.3
Sed02g0344 . 2 146 SBP-box Gene Family AT5G43270 54.6 1.4e-36 151.8
Sed05g1290 . 181 1014 SBP-box Gene Family AT2G47070 55.2 3.6e-240 828.9
Sed06g1210 . 178 1013 SBP-box Gene Family AT2G47070 55.4 7.6e-238 821.2
Sed02g0344 . 2 146 SBP-box Gene Family AT5G43270 54.6 1.4e-36 151.8
Sed05g1290 . 25 1014 SBP-box Gene Family AT3G60030 53.8 1.6e-274 943.3
Sed06g1210 . 25 1013 SBP-box Gene Family AT3G60030 53.9 2.9e-271 932.6
Sed09g0380 . 15 149 SBP-box Gene Family AT5G50570 58.1 1.3e-38 158.3
Sed09g0381 . 15 149 SBP-box Gene Family AT5G50570 58.1 1.3e-38 158.3
Sed09g0380 . 15 149 SBP-box Gene Family AT5G50670 58.1 1.3e-38 158.3
Sed09g0381 . 15 149 SBP-box Gene Family AT5G50670 58.1 1.3e-38 158.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003053 3 3 4 4 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 0 1 2 1 2 2 2 52
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38520 PF03110 SBP 6.90E-30 No_clan Sed TF