Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1300 ATGTCTCGCCAACTCCCCAACACTGCGTTCCACAAGTCCAAGACGCTTGACAACAAATATATGCTGGGAGATGAGATTGGGAAAGGAGCATATGGGCGAGTCTACAAAGGTCTGGATTTGGAGAACGGGGACTTTGTTGCTATTAAGCAAGTTTCCTTGGAGAATATTGCTCAAGAGGACCTCAACATTATAATGCAAGAGATTGACTTACTGAAGAATTTGAACCACAAAAACATAGTGAAGTATCTTGGATCTCTGAAAACAAAGACCCACCTTCACATAATACTTGAGTATGTGGAGAACGGATCACTTGCCAACATTATCAAGCCAAATAAATTTGGACCTTTTCCAGAATCATTGGTTGCTCTTTATATTTCTCAGGTTTTGGAAGGCTTGGTTTATCTTCATGAGCAGGGTGTAATTCATCGAGATATAAAAGGTGCGAATATACTGACAACCAAAGAGGGTCTTGTGAAACTTGCTGATTTTGGTGTTGCAACAAAATTAACAGAAGCTGACGTTAATACACATTCAGTTGTTGGAACACCTTACTGGATGGCTCCTGAGGTTATTGAAATGTCAGGAGTTTGTGCTGCTTCTGACATATGGAGCGTCGGATGTACTGTGATTGAACTACTTACTTGCGTACCTCCATATTATGATCTTCAACCTATGCCCGCTCTTTTTCGCATTGTACAGGATAAGCATCCTCCAATTCCAGATAGCCTATCATCAGACATCTCTGATTTTTTACGCCAGTGCTTTAAGAAGGATGCTAGGCAAAGGCCTGATGCTAAAACTTTGCTTTCTCATCCTTGGATACAGAACTGTCGACGGGCTTTGCATTCTTCTCTTCGCCATAGTGGCACACTGAGAAACACTCAACAAGACGAATCGACTGGAGCAGAAATTTCTAATGGAGACGATCAAAACTCTTGTGAAATCCTTTTAGCGGAGAAAAATAAAGCTGCTGGTTCTGATTTTAAAGCTGATTCAAGGAAGGAACTGTTGTCAGATGTTGCCACTGATACGAGCAAGTCCCCAGAACATTTTGCTTCAGGCCCTAATTTTGTTGAGGAAGGAGAAAGCCTAGAAGAGGATACTCTATTGGATCAAGTTCCTACCTTATCCATTCATGAAAGTTCATCTCTTCTAATTGGTTCTTGCACACTTGCTACCTCTGAGCCAACTGAGTCTCATGAGTCTCAGAGTAGAGCCCATGATGAAGTGATAATGAACGGCAAAGTGCCAGTAGAATTAAGAAAAGATGCTTCTAGGAAACATGGAGAGAACGAAACTTCTACATCTGGAAATAGATCATTTGTTTTTGGATCTGAAAGTCAAGATAATAGTTTTCAAAAGGTTTCAAAGATGTCAATTGCTTTGGGAGGAAACGAGCTGAGCAAATTTAGCGACACTCCAGGAGATGCATCCTTAGATGATTTATTTCAACCCTTAGATAAGCTCCCCGGGGATCAAGCTGCTGAAGCATCAACATCTCTATCTACCCCACAATCAAACATAGGTGATGTGTCAGTAAATGATGTTGGGAAAAATGATCTGGCCTCAAAGTTGAGGGCTACGATTGCTCAGAAACAAATGGAAAATGAAATGGTACAGGCTAATGGTGGTGGTAACCTGCTTCGACTAGTGATGGGTGTTTATGATGTTGATATTGGTGGTTTGGTTTTTGATGAGAAGTTGCAAGGAGAAAACCTTTATCCTTTGCCGGCTGTTGAATTCGGAAGATTAGTTGGGTCATTGAGACCTGATGAACCTGAAGATGTAATTGTATCTGCCTGTCAAAAGTTGATTGCCATCTTCCGTCAAAGACCTGAGCAGAAAATTGTTTATGTTACACAGCATGGTCTACTCCCATTGATGGAGTTGCTTGAAGTTCCAAAAACTCGTATCATATGTTCAGTTCTCCAGCTTATAAATCAGATAGTTAAGGATAATGGTGATTTCCAAGAAAATGCCTGTCTTGTTGGTCTGATTCCACTGGTTATGGGATTTTCGGTTCCCGACCGTCCTCGAGAAGTTCGTATGGAAGCAGCTTATTTCTTTCAGCAGCTTTGTCAATCAAGCTCTTTGACATTGCAAATGTTCGTTGCTTGCCGTGGAATACCTGTATTAGTAAGCTTTTTAGAGGCTGATTATGCAAAATACAGGGAAATGGTTCACCTAGCTATTGATGGAATGTGGCAGATCTTTAAGCTCCAGCGTTCCACTCTGAGAAATGGCTTCTGTCGTATAGCAGCAAAAAGTGGAATTCTACTTAGACTTATTAACACCCTTTACAGCTTAAATGAGGCAACTCGCTTAGCTTCCATAACGATTGGGACTGGAAATCCAGTTGATGGGTTAACACAACGGCCACGATCAGGTCAACTAGATTCAAGCCACCCTATATTCAGTCAGTACGAGGCCACGTTTCCTATGCCTGATCAGACTGATCTTTTGAAGGTTAAGCATGGAATAGTTGATCATCACCTACCTACTGGAACACCAGAACCTTCTAGGGCTTCAACTTCACATTCTCAAAGATCAGATGCCAATCAATCTGATCACCGAAACTTTTCTACAGATGCTGACAGACCTCAATCTAGCAATGCCACAAATGAAGTCTTGGGAACTTTTAAACCGTCTGAGCTAGCATCTTTAGAAAAAGTTGTAAATTTAGCAACCAATGAACTGCCTGGCTCTGCTCCTAGAGAACATGAAAATGTAGATAGATGGAAAACCGAGCGGATGGCCAATTCAACCAGGACTTCCACAGACAAACCTCCGAAAATGGTGGAACCTGCATCTAATGGATTTCTTACAACATTGGCAGCTATTCAGCAAGAGCAAGTTCGACCCCTTCTAAGTCTGTTGGAAAAAGAGCCTCCTTCTCGACATTTTTCTGGTCAGCTTGAGTACGTGCACCATTTTTCCGGATTGGAGAGACATGAGACTATAATGCCTCTATTGCATGCATCAAATGAGAAGAAGATAAATGGGGAGTCTGATTTCTTAATGGCAGAATTCGCTGAGGTTTCTCAACGTGGAAAAGACAATGGAAATCTTGACCCTACTTCTAAGGCTTCTCTTAAATCCGTGGCGAAGAAGGTTGGAACCCCGGTGTCCAATGAAGGAGCGCCATCCACATCTGGAATTGCTTCACAGACAGCATCTGGGGTACTTTCAGGTTCGGGTGTCTTAAATGCTAGACCAGGTGGCTGA 3225 42.02 MSRQLPNTAFHKSKTLDNKYMLGDEIGKGAYGRVYKGLDLENGDFVAIKQVSLENIAQEDLNIIMQEIDLLKNLNHKNIVKYLGSLKTKTHLHIILEYVENGSLANIIKPNKFGPFPESLVALYISQVLEGLVYLHEQGVIHRDIKGANILTTKEGLVKLADFGVATKLTEADVNTHSVVGTPYWMAPEVIEMSGVCAASDIWSVGCTVIELLTCVPPYYDLQPMPALFRIVQDKHPPIPDSLSSDISDFLRQCFKKDARQRPDAKTLLSHPWIQNCRRALHSSLRHSGTLRNTQQDESTGAEISNGDDQNSCEILLAEKNKAAGSDFKADSRKELLSDVATDTSKSPEHFASGPNFVEEGESLEEDTLLDQVPTLSIHESSSLLIGSCTLATSEPTESHESQSRAHDEVIMNGKVPVELRKDASRKHGENETSTSGNRSFVFGSESQDNSFQKVSKMSIALGGNELSKFSDTPGDASLDDLFQPLDKLPGDQAAEASTSLSTPQSNIGDVSVNDVGKNDLASKLRATIAQKQMENEMVQANGGGNLLRLVMGVYDVDIGGLVFDEKLQGENLYPLPAVEFGRLVGSLRPDEPEDVIVSACQKLIAIFRQRPEQKIVYVTQHGLLPLMELLEVPKTRIICSVLQLINQIVKDNGDFQENACLVGLIPLVMGFSVPDRPREVRMEAAYFFQQLCQSSSLTLQMFVACRGIPVLVSFLEADYAKYREMVHLAIDGMWQIFKLQRSTLRNGFCRIAAKSGILLRLINTLYSLNEATRLASITIGTGNPVDGLTQRPRSGQLDSSHPIFSQYEATFPMPDQTDLLKVKHGIVDHHLPTGTPEPSRASTSHSQRSDANQSDHRNFSTDADRPQSSNATNEVLGTFKPSELASLEKVVNLATNELPGSAPREHENVDRWKTERMANSTRTSTDKPPKMVEPASNGFLTTLAAIQQEQVRPLLSLLEKEPPSRHFSGQLEYVHHFSGLERHETIMPLLHASNEKKINGESDFLMAEFAEVSQRGKDNGNLDPTSKASLKSVAKKVGTPVSNEGAPSTSGIASQTASGVLSGSGVLNARPGG 1074
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25162172 25181765 + Sed0024928.1 Sed05g1300 713926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1300 1074 FunFam MAP3K epsilon protein kinase 1 17 306 - -
Sed05g1300 1074 SUPERFAMILY Protein kinase-like (PK-like) 17 275 IPR011009 -
Sed05g1300 1074 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524(InterPro)
Sed05g1300 1074 Gene3D - 577 780 IPR011989 -
Sed05g1300 1074 MobiDBLite consensus disorder prediction 479 514 - -
Sed05g1300 1074 SMART serkin_6 20 274 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g1300 1074 ProSiteProfiles Protein kinase domain profile. 20 274 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g1300 1074 MobiDBLite consensus disorder prediction 1016 1074 - -
Sed05g1300 1074 MobiDBLite consensus disorder prediction 829 874 - -
Sed05g1300 1074 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g1300 1074 Pfam Protein kinase domain 20 274 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g1300 1074 MobiDBLite consensus disorder prediction 495 513 - -
Sed05g1300 1074 MobiDBLite consensus disorder prediction 288 308 - -
Sed05g1300 1074 MobiDBLite consensus disorder prediction 400 433 - -
Sed05g1300 1074 PRINTS Tyrosine kinase catalytic domain signature 96 109 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g1300 1074 PRINTS Tyrosine kinase catalytic domain signature 243 265 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g1300 1074 PRINTS Tyrosine kinase catalytic domain signature 134 152 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g1300 1074 PRINTS Tyrosine kinase catalytic domain signature 200 222 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed05g1300 1074 Gene3D Transferase(Phosphotransferase) domain 1 17 315 - -
Sed05g1300 1074 FunFam MAP3K epsilon protein kinase 1 573 781 - -
Sed05g1300 1074 CDD STKc_Cdc7_like 19 274 - -
Sed05g1300 1074 MobiDBLite consensus disorder prediction 394 447 - -
Sed05g1300 1074 SUPERFAMILY ARM repeat 583 777 IPR016024 -
Sed05g1300 1074 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 12 278 IPR050538 -
Sed05g1300 1074 MobiDBLite consensus disorder prediction 1043 1064 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1300 Sed-Chr5:25162172 Sed08g1693 Sed-Chr8:32027785 1.40E-59 dispersed
Sed06g1197 Sed-Chr6:35021960 Sed05g1300 Sed-Chr5:25162172 2.40E-26 dispersed
Sed14g0569 Sed-Chr14:5695413 Sed05g1300 Sed-Chr5:25162172 7.40E-08 transposed
Sed05g1300 Sed-Chr5:25162172 Sed06g1194 Sed-Chr6:34931060 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79158 PF00069 Pkinase 1.00E-72 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1300 - - - 0.0