Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1301 ATGGAGGCTGCAGCAATGACTAGCGTTGTGCCGGCGAATCGACGGCGGGCGGTTAACGCGCCGGATGAGAAGTTGGAATTCGAGACAACGGAGGGGGTTGAGCCGATATTGAGTTTCGATCAGATGGGCATCAAGGATGATCTTCTCCGTGGCATATATGCATACGGTTTTGAAAAGCCCTCGGCCATTCAGCAGAGAGCCGTCAGGCCGATTATCGAGGGTCGAGATGTTATTGCTCAGGCTCAATCTGGAACTGGCAAGACCTCCATGATTGCCCTTACTGTTTGCCAGACCGTTGATACCTCCAGCAGAGAGGTACAGGCATTGATCTTGTCCCCTACAAGAGAATTGGCAACTCAAACAGAGAAAGTTATATTGGCAGTTGGAGACTACATTAATATACAGGCACATGCATGTATTGGAGGCACAAGTGTGGGTGAAGACATTAGAAAGCTTGAGTTTGGAGTTCAGGTAGTTTCAGGAACTCCGGGAAGAGTTTGTGACATGATCAAGAGGAGAACATTGCGTACCAGAGCCATTAAGTTGTTAGTTCTGGATGAATCCGATGAGATGTTGAGCAGAGGTTTTAAAGACCAAATTTATGATGTATACCGATACCTTCCACCAGAACTTCAGGTTGTCTTGATTTCTGCCACTCTTCCTCATGAAATCCTGGAGATTACAAATAAGTTTATGACTGATCCTGTGAGGATCCTTGTGAAGCGTGATGAGTTAACTTTGGAGGGTATTAAGCAATTCTTCGTTGCTGTTGAAAGGGAAGAGTGGAAATTTGATACCTTATGTGATCTTTATGACACCTTAACTATCACTCAAGCTGTAATATTCTGTAACACCAAGCGTAAGGTTGAATGGTTGACTGAGAAGATGCGCAGTAATAACTTCACAGTTTCACAAATGCATGGGGACATGCCTCAAAGGGAAAGAGATGCAATCATGGGGGAGTTTCGTTCAGGAACTACCCGTGTCCTAATCACTACTGATGTTTGGGCCCGAGGGCTTGATGTTCAGCAGGTATCACTGGTGATTAACTATGACCTTCCGAACAATCGAGAACTTTACATTCACAGGATAGGAAGGTCTGGTCGGTTTGGGCGCAAGGGTGTTGCTATTAACTTTGTGAAAACTGATGACATCAAGATCCTGAGAGATATTGAACAATACTACAGTACCCAGATTGATGAAATGCCCATGAACGTTGCGGATTTGATTTAA 1233 44.77 MEAAAMTSVVPANRRRAVNAPDEKLEFETTEGVEPILSFDQMGIKDDLLRGIYAYGFEKPSAIQQRAVRPIIEGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAVGDYINIQAHACIGGTSVGEDIRKLEFGVQVVSGTPGRVCDMIKRRTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPHEILEITNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVEWLTEKMRSNNFTVSQMHGDMPQRERDAIMGEFRSGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKTDDIKILRDIEQYYSTQIDEMPMNVADLI 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25302551 25308756 - Sed0003811.1 Sed05g1301 713927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1301 410 Gene3D - 27 245 IPR027417 -
Sed05g1301 410 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 249 410 IPR001650 -
Sed05g1301 410 FunFam Eukaryotic initiation factor 4A-III 21 241 - -
Sed05g1301 410 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 37 65 IPR014014 GO:0003724(InterPro)
Sed05g1301 410 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 105 393 IPR027417 -
Sed05g1301 410 Pfam Helicase conserved C-terminal domain 263 371 IPR001650 -
Sed05g1301 410 SMART ultradead3 56 253 IPR014001 -
Sed05g1301 410 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 31 395 - GO:0003723(PANTHER)|GO:0003724(PANTHER)|GO:0003729(PANTHER)|GO:0005730(PANTHER)|GO:0071013(PANTHER)
Sed05g1301 410 Gene3D - 246 410 IPR027417 -
Sed05g1301 410 SMART helicmild6 290 371 IPR001650 -
Sed05g1301 410 Pfam DEAD/DEAH box helicase 62 225 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Sed05g1301 410 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 68 238 IPR014001 -
Sed05g1301 410 CDD DEADc_EIF4AIII_DDX48 39 239 - -
Sed05g1301 410 CDD SF2_C_DEAD 250 380 - -
Sed05g1301 410 FunFam Eukaryotic initiation factor 4A-III 244 410 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0588 Sed-Chr2:43554557 Sed05g1301 Sed-Chr5:25302551 6.40E-55 dispersed
Sed02g1645 Sed-Chr2:51765807 Sed05g1301 Sed-Chr5:25302551 1.50E-75 dispersed
Sed05g1301 Sed-Chr5:25302551 Sed11g0872 Sed-Chr11:21168701 1.90E-142 dispersed
Sed05g1301 Sed-Chr5:25302551 Sed08g1779 Sed-Chr8:32579374 1.10E-142 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1301 K13025 - csv:101222664 779.63