Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1319 ATGGGTCGAGGGAAGATTGAAATCAAACGGATTGAGAATGCCAATAGCAGGCAAGTTACATTCTCTAAGAGACGAGCTGGGTTGCTTAAGAAGGCTCAGGAGCTTGCTATTCTTTGTGATGCTGAAGTTGCTGTTATCATATTCTCTAACACTGGCAAGCTTTTTGAGTTTTCCAGTTCTGGCATGAAGCATACTATTTCAAGATACAACAGATGTGTAGAATCTTCAGAGGCTGTGGTTGATGGACACAAGAATCAAGAGCATGAGGAGGTGGACAATCTAAGAGATGAAATTACAGCTCTGCAAATGAAACAATTACAGCTTTTGGGAAAGGATCTGACTGGCTTGGGCTTCAAGGAATTGCAAAGCCTAGAGCAGCAACTAAATGAAGGGCTATTACTGGTGAAAGAGAAGAAGGAACAGTTACTGATGGAGCAATTAGAGCAATCGAGGATACAGGTGAGCGAGCTTCGATGTCTGCTTCCGCCAGTTGACTGTCCGCTTCCTGCTTTTCTTGAGTTTTGCTCCATAGAACATAAGAGCATTGGCATTATAAGTCCTGATATGGCCTGCAACTCTGAAATTGATAGAGGAGACTCAGACACCACCTTGCACTTGGGGCTGCCATCTCATGTTCATTGCAAGAGAAAAGAGGCTGAGAGAGATGCTCATTCAAATAATTCAGGGAGTCAAATGGGCCTACTATGA 708 43.5 MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSGMKHTISRYNRCVESSEAVVDGHKNQEHEEVDNLRDEITALQMKQLQLLGKDLTGLGFKELQSLEQQLNEGLLLVKEKKEQLLMEQLEQSRIQVSELRCLLPPVDCPLPAFLEFCSIEHKSIGIISPDMACNSEIDRGDSDTTLHLGLPSHVHCKRKEAERDAHSNNSGSQMGLL 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 25817692 25823583 + Sed0025694.1 Sed05g1319 713945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1319 235 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Sed05g1319 235 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed05g1319 235 ProSiteProfiles K-box domain profile. 84 167 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed05g1319 235 Pfam K-box region 83 156 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed05g1319 235 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed05g1319 235 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 186 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed05g1319 235 MobiDBLite consensus disorder prediction 215 235 - -
Sed05g1319 235 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed05g1319 235 Coils Coil 84 104 - -
Sed05g1319 235 Gene3D - 13 84 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed05g1319 235 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed05g1319 235 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Sed05g1319 235 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed05g1319 235 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed05g1319 235 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed05g1319 235 Coils Coil 121 141 - -
Sed05g1319 235 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1319 Sed-Chr5:25817692 Sed14g0141 Sed-Chr14:1546510 2.00E-35 dispersed
Sed04g2522 Sed-Chr4:38112232 Sed05g1319 Sed-Chr5:25817692 8.30E-103 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38521 PF01486 K-box 1.40E-15 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1319 - - - 0.0