Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1341 ATGTGCGGTGGTCCATCCAATTCTTCATCTACTACATCAGCAAGCTCACCCAACTCCAAAGATATGAATCATTTAACTTTTGATTGTGAGGATTCTTTTTATAGTTTGCTGGAGCTTGCTTCTGACAATGATGCTGAAGGCTTCAAGCGTTTGATGGAGTCTGATTTGTTTTCACTTAACAAGTCTGGACTCTGGTATGTTCGCCAAAAAGGCTCAAAACAAGTTGTTCAGGAGCATAGAACACCTCTGATGGTTGCTGCAACATATGGCTGTGTTGATGTTCTGAATCTGATACTAGCATATCCTGAGGTTGATGTTAATCTCTCGTCTAGCACAGACAAGAGCACTGCCCTCCATTGTGCTACTTCCAGTGGGTCTTTGAATGCAGTTGATGTTGTTGATTTGCTTTTATCTGCTGGCGCTGACCCGAATACCAAGGATATTAATGGTGACTGCCCTGTGGATGTCATTTTTGTTCACCCGAAGTTGCAGAAGCAGAATACCATGTTCAGGCTCGAGGAACTTCTCAATAATCAATCGAATGGATCCATGGACGTGTCCAGTTTGCATTTGTCAATCAAAAGGCTTGATTCAGAGTCACCACCACTCTCCTCATCATTGGATGACGAGTTTCCATCTCCACCCAAGTTTATGTCTTCTCCCAAATTTACTGATGGGCTCTCCAACTCTACAAAGGAGAAAAAAGAATATCCAATTGATCCATCTCTTCCTGACATCAAGAACAGCATATATGCAACTGATGAGTTTCGCATGTTCTCTTTCAAAGTGAGGCCTTGTTCTCGGGCGTATTCCCATGATTGGACTGAGTGTCCTTTTGTCCACCCAGGGGAGAATGCACGCAGAAGAGACCCAAGAAAGTTTCACTACAGCTGTGTTCCTTGCCCAGACTTCAGAAAGGGGGCTTGTAGGCGTGGGGATATGTGTGAATATGCTCATGGTGTATTTGAGTGTTGGCTTCACCCAGCTCAGTATCGCACTCGTCTTTGCAAGGATGGCACAAGTTGCAATCGGCGTGTCTGTTTCTTTGCCCACACCAATGAGGAGTTAAGGCCATTGTATGTGTCTACTGGATCTGCTGTTCCTTCCCCAAGATCAATGGGGTCTGCTCCAACTGTGATGGATATGGCTACTGCATTGGGTCTTTTGCCTGGTTCACCTTCATCAGTGTCAGCTTTATCTCCATCTCCATTTAACCAGTCCATGTCTCCTTCTTCTAATGGTGTTTCTCACTCTTCTGTGAACTGGCAGCAACCTAATGTACCAACTCTTCATCTTCCAGGAAGTAACCTTCAATCCAGCCGGCTGAGGTCATCTCTGAATGCCAGGGATATGTATCTGGAGGATTTGAATGGGATGCCTGACTTTGATAACCAGCCAAGAATTTTGAACGACATGAACTGTTTCTCTCAGCCTCGTCCGAGTGCTATATCTGTGAGTCGATCTGGTTGGAGCCAAACTATAAATCCTAACAATCTTGAAGAGCTATTTTCTTCTGAGATCTCTTTGTCTCCACGATTCTCTGATCCAACAGCCAATGTATTTTCACCTACTCGCAAATCAACATTATTTAACCAATTCCAGCAACAGCAGCAGAACATGTTGTCACCTATTAACACTGGCATGATGTCTCCAAAGAATGTCGAGCATCCTTTTTTGCAGGCCTCTTTTGGAGTTTCGTCACCAGGAAGGATGTCCCCGAGAAGCACTGAGCCACTGTCCCCAATGGGATCTAGGTTCTCTGCCTTTGCACAGCGTGAAAGGCAACATCTCCGCTCTCTCAGCTCTAGGGAGCTTGGATCCAATGTCCCTAGCTCATTAATCGGATCTCCTGTCAATTCTTTGCCTAATTGGGGATCCCCCAATGGAAAGGCAGATTGGTCAGTTGGTAAGAATGAACCGGGTCAACTGCGAAGATCATCTTCGTTTGAAATGGGAAATAATGGGGAGGAGCCCGACTTATCATGGGTTCAATCCCTGGTGAAGGAATCCCCACCTGAGATGCTAAAAGAGAAGCTGGCAACGCCTGTGATGGGTGCTGCAGCATCCGGTGAGGGTGGTCTAACTACTACTAAACCACAATTAGAATCCACTGATCATTCTGTGATAGGTGCTTGGCTTGAGCAGATGCAGCTTGATCAGCTTGTAGTGTAG 2172 45.53 MCGGPSNSSSTTSASSPNSKDMNHLTFDCEDSFYSLLELASDNDAEGFKRLMESDLFSLNKSGLWYVRQKGSKQVVQEHRTPLMVAATYGCVDVLNLILAYPEVDVNLSSSTDKSTALHCATSSGSLNAVDVVDLLLSAGADPNTKDINGDCPVDVIFVHPKLQKQNTMFRLEELLNNQSNGSMDVSSLHLSIKRLDSESPPLSSSLDDEFPSPPKFMSSPKFTDGLSNSTKEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTNEELRPLYVSTGSAVPSPRSMGSAPTVMDMATALGLLPGSPSSVSALSPSPFNQSMSPSSNGVSHSSVNWQQPNVPTLHLPGSNLQSSRLRSSLNARDMYLEDLNGMPDFDNQPRILNDMNCFSQPRPSAISVSRSGWSQTINPNNLEELFSSEISLSPRFSDPTANVFSPTRKSTLFNQFQQQQQNMLSPINTGMMSPKNVEHPFLQASFGVSSPGRMSPRSTEPLSPMGSRFSAFAQRERQHLRSLSSRELGSNVPSSLIGSPVNSLPNWGSPNGKADWSVGKNEPGQLRRSSSFEMGNNGEEPDLSWVQSLVKESPPEMLKEKLATPVMGAAASGEGGLTTTKPQLESTDHSVIGAWLEQMQLDQLVV 723
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26201561 26205541 + Sed0016617.1 Sed05g1341 713967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1341 723 MobiDBLite consensus disorder prediction 1 21 - -
Sed05g1341 723 MobiDBLite consensus disorder prediction 199 239 - -
Sed05g1341 723 ProSiteProfiles Zinc finger C3H1-type profile. 300 322 IPR000571 GO:0046872(InterPro)
Sed05g1341 723 ProSiteProfiles Ankyrin repeat profile. 113 148 IPR002110 GO:0005515(InterPro)
Sed05g1341 723 SUPERFAMILY Ankyrin repeat 40 158 IPR036770 -
Sed05g1341 723 Pfam Ankyrin repeats (3 copies) 44 147 IPR002110 GO:0005515(InterPro)
Sed05g1341 723 PANTHER UNKEMPT FAMILY MEMBER 68 671 IPR045234 -
Sed05g1341 723 MobiDBLite consensus disorder prediction 397 421 - -
Sed05g1341 723 Gene3D - 295 358 - -
Sed05g1341 723 SMART c3hfinal6 330 353 IPR000571 GO:0046872(InterPro)
Sed05g1341 723 SMART c3hfinal6 295 321 IPR000571 GO:0046872(InterPro)
Sed05g1341 723 Gene3D - 8 218 IPR036770 -
Sed05g1341 723 PRINTS Ankyrin repeat signature 132 146 IPR002110 GO:0005515(InterPro)
Sed05g1341 723 PRINTS Ankyrin repeat signature 79 94 IPR002110 GO:0005515(InterPro)
Sed05g1341 723 ProSiteProfiles Ankyrin repeat region circular profile. 113 147 - -
Sed05g1341 723 SMART ANK_2a 113 145 IPR002110 GO:0005515(InterPro)
Sed05g1341 723 SMART ANK_2a 78 108 IPR002110 GO:0005515(InterPro)
Sed05g1341 723 MobiDBLite consensus disorder prediction 640 658 - -
Sed05g1341 723 FunFam Zinc finger CCCH domain-containing protein 66 253 321 - -
Sed05g1341 723 MobiDBLite consensus disorder prediction 620 658 - -
Sed05g1341 723 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 299 320 IPR000571 GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1341 Sed-Chr5:26201561 Sed12g1226 Sed-Chr12:8602749 2.50E-238 dispersed
Sed04g2538 Sed-Chr4:38201111 Sed05g1341 Sed-Chr5:26201561 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38522 PF12796 Ank_2 7.60E-10 CL0465 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1341 - - - 0.0