Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1370 ATGGAGCTTGGTTTGAGATTGGGAGATAATGCTCCTCCTCCATTTGGGAAACCTCCACACCCTAATGTTTCCCATTCTGCCCTTGATTTCTGCCTTGGCTTTTCTACTTCTCTTCATCAACAAATCCAACCCCACAAACCAAACACATTTCATCAAAACGATGTCGTTGCCTGCTTTCTAGATGCTCCGCCGCCGCCGCCGCCGGATCTTCAGCTCCAGCTTCTTCCTCGTACTCCTGCCGCCGCCGCCCCTCGCCGGTCTACTTCTCTAACCGAATCAGGCGATGCGACGACGGCAGAGGGCGGCGAATTGGCAAGAAATAACCCATCACTGTGGTCGTCGTTATACGGCGGAGGAGGAGCGGCGGCGGCGTCGGACGGCGGCGGAATATTGGAAGTGGAGGAGGGAAACTGCGATGAATTAGAGGATGAGAATTTGGGTTCCAAAAAGAAACTGAGGCTTTCGAGAGAACAATCGGCGTTTCTCGAAGAGAGCTTCAAAGAGCATCATACACTTTACCCTAAGCAAAAGCTAGACCTTGCAAGAAGGTTAAATCTTCGTCCTCGACAAGTAGAAGTCTGGTTTCAAAACAGACGAGCAAGAACAAAGCTGAAACAAACAGAAGTTGACTGCGAATACTTGAAGAAATGCTGCGAAAGCTTAACCCAACAAAACAGGAAGCTTCGAAAGGAGCTTCAAGATTTGAGAGCTTTGAAAACCACTGATTCTCTAACCTTCATGCATTCTCCCGCCACCACTCTCACCTTGTGCTCGTCTTGCGAACGAGCCGCCGCTTCGGGCGGACCGAAGCACCCGGCCACTTCCAAGCCTTCTGGGTTTTCCTTTACTACAACTGGGTCGTTTCCATTTTCACCAACTGATCCCTCCGGAGAGAATAATTAG 903 50.28 MELGLRLGDNAPPPFGKPPHPNVSHSALDFCLGFSTSLHQQIQPHKPNTFHQNDVVACFLDAPPPPPPDLQLQLLPRTPAAAAPRRSTSLTESGDATTAEGGELARNNPSLWSSLYGGGGAAAASDGGGILEVEEGNCDELEDENLGSKKKLRLSREQSAFLEESFKEHHTLYPKQKLDLARRLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKKCCESLTQQNRKLRKELQDLRALKTTDSLTFMHSPATTLTLCSSCERAAASGGPKHPATSKPSGFSFTTTGSFPFSPTDPSGENN 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26628594 26633620 - Sed0020802.1 Sed05g1370 713996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1370 300 SMART halz 205 248 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed05g1370 300 CDD homeodomain 149 206 IPR001356 GO:0003677(InterPro)
Sed05g1370 300 Coils Coil 131 151 - -
Sed05g1370 300 Pfam Homeobox associated leucine zipper 205 239 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed05g1370 300 MobiDBLite consensus disorder prediction 263 300 - -
Sed05g1370 300 ProSiteProfiles 'Homeobox' domain profile. 145 205 IPR001356 GO:0003677(InterPro)
Sed05g1370 300 Pfam Homeodomain 149 203 IPR001356 GO:0003677(InterPro)
Sed05g1370 300 Coils Coil 218 241 - -
Sed05g1370 300 SMART HOX_1 147 209 IPR001356 GO:0003677(InterPro)
Sed05g1370 300 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 28 269 IPR050762 -
Sed05g1370 300 ProSitePatterns 'Homeobox' domain signature. 180 203 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Sed05g1370 300 MobiDBLite consensus disorder prediction 79 109 - -
Sed05g1370 300 MobiDBLite consensus disorder prediction 276 300 - -
Sed05g1370 300 SUPERFAMILY Homeodomain-like 147 206 IPR009057 -
Sed05g1370 300 Gene3D - 153 203 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1370 Sed-Chr5:26628594 Sed09g1437 Sed-Chr9:38253639 8.70E-52 dispersed
Sed05g1370 Sed-Chr5:26628594 Sed07g0689 Sed-Chr7:5141100 3.20E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
38523 PF00046 Homeodomain 7.00E-15 CL0123 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1370 K09338 - csv:101208907 213.772