Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1380 ATGGCCATTGAAACTCTTCAGAACGATTTCATTTTCCGGTCCATATTACCGGACATCTACATCCCAAGCCACCTCCCCCTTCACTCCTACTGTCTCCACCACCACACGGCGGACAACGGCCACCGGACCTGTCTAATCAACGGCCTCACCGGCGAGTCCTTCACCTACACCGACGTCGACCTCACCGCTCGCAAGGTCGCCGCCGGATTCACCAAACTCGGCATTTCTAAAGGCGATGTGGTCATGCTCCTCCTCCCGAACTCGCCGGAATTCGTCTTCTCCTTCCTCGGCGCGTCCTACATCGGCGCCATCATGACGGCGGCGAATCCGTTCTTCACGGCGGCGGAGATCACGAAGCAGGCGAAAGGATCCAAGGCGAAACTGATTATAACGCAGTCGTCGTATTACGAGAAAGTGAGGAACATAACAGAGGAATTGCCAGATGCGAAGCTCATGACCGTCGATTCACCACCGGAAGGTTGCTTATCGTTCGCCGATCTAACCAAAACCGACGCTCAGGATCTGCCGGCGGTGGAGATCAGTCCGGACGACGTCGTGGCGCTGCCGTACTCCTCCGGAACCACCGGATTTCCGAAAGGCGTGATGCTAACGCACAAAGGATTGGTGACGAGTGTGGCTCAGCAAGTGGACGGCGAAAATCCGAATCTGTATTACCGGAACGACGATGTGATTCTGTGCGTTTTGCCGCTTTTTCACATCTACTCGTTGAACTCTGTTCTGCTCTGCGGGTTGCGCGCCGGAGCGACGATTCTGATTATGCCTAAATTTGAGATCGGTTCGCTTCTGAAACTGGCGGAGAGATTTGGAGTTTCGATTGCGCCGGTCGTGCCGCCGATCGTTCTCGCCATTGCGAAGTCGCCGGATCTGGAGAAGTACGATCTGTCGTCGATCAGAATGATCAAGTGCGGCGGAGCTCCGCTTGGGAAGGAGCTTGAAGATACCGTGAGGGCCAAGTTTCCTAAGGCTGTGCTTGGCCAGGGTTACGGAATGACGGAGGCCGGGCCAGTACTGACAATGGGATTAGCATTTGCGAAAGAGCCGTTTCCGATGAAGCCAGGCGCGTGCGGCACCGTGGTGAGGAACGCCGAGATGAAGATCGTGGACACCGAAACCGGCGATTCCCTGCCGCGAAACACGCCCGGAGAGATCTGCATCCGAGGCGACCAAATCATGAAAGGCTATCTCAACAACCCGGAGGCGACGGCCGCCACCATCGACGACGGCGGCTGGCTGCACACCGGCGACATCGGCTTCATCGACGACGACGACGAGCTCTTCATCGTCGACCGCTTGAAGGAGCTCATTAAGTACAAGGGATTTCAGGTCGCGCCGGCAGAACTCGAAGCTCTGCTGCTCACTCACCCGGTGATCTCCGATGCCGCCGTCGTTCCGATGAAAGATGAAGAGGCTGGGGAAGTTCCTGTTGCGTTTGTGGTGAAATTGAAGAATTCTGAAGTCACTCAGGATGAAATTAAACAATTTGTATCCAAACAGGTGGTTTTCTACAAGAGAATCAACCGGGTATTTTTCATAGACGCAATTCCGAAATCGCCATCGGGCAAGATCTTGAGGAAGGAGTTGAGGGCAAAGTTGGCAATTGATTTTCCAATTTCTAATTAA 1641 54.54 MAIETLQNDFIFRSILPDIYIPSHLPLHSYCLHHHTADNGHRTCLINGLTGESFTYTDVDLTARKVAAGFTKLGISKGDVVMLLLPNSPEFVFSFLGASYIGAIMTAANPFFTAAEITKQAKGSKAKLIITQSSYYEKVRNITEELPDAKLMTVDSPPEGCLSFADLTKTDAQDLPAVEISPDDVVALPYSSGTTGFPKGVMLTHKGLVTSVAQQVDGENPNLYYRNDDVILCVLPLFHIYSLNSVLLCGLRAGATILIMPKFEIGSLLKLAERFGVSIAPVVPPIVLAIAKSPDLEKYDLSSIRMIKCGGAPLGKELEDTVRAKFPKAVLGQGYGMTEAGPVLTMGLAFAKEPFPMKPGACGTVVRNAEMKIVDTETGDSLPRNTPGEICIRGDQIMKGYLNNPEATAATIDDGGWLHTGDIGFIDDDDELFIVDRLKELIKYKGFQVAPAELEALLLTHPVISDAAVVPMKDEEAGEVPVAFVVKLKNSEVTQDEIKQFVSKQVVFYKRINRVFFIDAIPKSPSGKILRKELRAKLAIDFPISN 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26808599 26813164 - Sed0008824.1 Sed05g1380 714006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1380 546 Pfam AMP-binding enzyme C-terminal domain 453 528 IPR025110 -
Sed05g1380 546 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 8 535 - GO:0016405(PANTHER)
Sed05g1380 546 FunFam Long-chain-fatty-acid--CoA ligase FadD 13 439 - -
Sed05g1380 546 CDD 4CL 21 534 - -
Sed05g1380 546 Gene3D - 5 438 IPR042099 -
Sed05g1380 546 Pfam AMP-binding enzyme 34 402 IPR000873 -
Sed05g1380 546 Gene3D - 439 540 IPR045851 -
Sed05g1380 546 ProSitePatterns Putative AMP-binding domain signature. 188 199 IPR020845 -
Sed05g1380 546 FunFam 4-coumarate--CoA ligase 2 440 540 - -
Sed05g1380 546 SUPERFAMILY Acetyl-CoA synthetase-like 18 538 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0377 Sed-Chr1:2882160 Sed05g1380 Sed-Chr5:26808599 1.20E-89 dispersed
Sed05g1380 Sed-Chr5:26808599 Sed07g0709 Sed-Chr7:5280572 3.10E-217 dispersed
Sed10g0061 Sed-Chr10:370625 Sed05g1380 Sed-Chr5:26808599 1.30E-32 transposed
Sed04g2599 Sed-Chr4:38469866 Sed05g1380 Sed-Chr5:26808599 6.20E-266 wgd
Sed05g1380 Sed-Chr5:26808599 Sed07g0708 Sed-Chr7:5273414 1.30E-207 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1380 K01904 - csv:101215427 956.051