Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1387 ATGGAGAAGAAGGCTTATCCGATCGGCGAAGAGTTTTATGTTCTCTATGAGGAGGTTGGGCAGGGCGTGAGTGCTTCAGTTCGCCGTGCTCTGTGTAAACCTCTCAATGAGATCGTTGCTATTAAGATCCTCGATTTTGAGCGCGACAATTGCGATCTGGTTAGGATTTTTCGCGAAGTACAAACGATGATCTTGGTTGACCACCCAAATGTCCTTAAATCACACTGCTCCTTTGTCCATGGCCATGATTTGTGGATTGTTATGCCCTACATGTCTGGAGGTTCTTGTCTTCACATATTGAAGGCTGCATATCCTGATGGTTTCGAGGAAGTGGTCATAGCAACAATATTACGAGAAGTATTGAAAGGGGTTGAATATCTTCATAATCATGGACACATTCATAGGGATATAAAAGCAGGGAATGTTCTTATTGATTCACGAGGTGCAATCAAGCTTGGGGATTTTGGTGTTTCTGCTTGTCTTTTTGATTCAGGAGATAGGCAGCGTGTGAGGAATACATTCGTGGGGACACCATGCTGGATGGCACCTGAGGTTATGGAGCAACTAAATGGTTATGACTTCAAGGCTGACATCTGGTCTTTTGCCATAACTGGGTTAGAGCTCGCCCATGGGCATGCTCCTTTCTCGAAATATCCTCCGATGAAGGTACTGATGATGACCTTGCAAAATGCACCTCCAGGCCTTGATTATGAGAGGGATAAAAAGTTCTCAAAGTCTTTTAAGCAGATGATTGCTAGTTGCTTGGTAAAAGATCCTTCGAAACGACCTTCTGCAAGTAAGCTGCTAAAGCATGCATTTTTTAAGCAAGCGCGATCAAGTGATTATATTGCACGTACCCTTTTGGAAGGGCTACCTGTTTTTGGTGATCGTATACAAGCGCTTAAGAGAAAGGAAGAGGATATGCTTGCCCAAAAGAAAATGCCATATGGAAAGAAGGAAGAATTATCACAGAATGAATATAAACGAGGAATCAGTGTATGGAACTTCAATATTGATGATTTAAAGGCTCAGGCATCTCTGATTCAAGAATTTGAAGAATCAATAAGTGAAATCGCTGAAGTTGGGAGCTCAAATTCCTTATCTACACTTGATGGACAAGAAAAGAAATTACAATGCCAAAATTCTTCAGAAAGTTCAGATATTGAAGAGAATGGCATGACGCGGAGACAACCCTCCATGAAAGTTAATGATACAGTAGATTGTAAAAAATCTATCAATGACTCGGCAATCACAAGTTCTTGCTCTCAACAACAATCTTCACCCCACAATGATAATCAAATTGAGAGTGGTTCCACTGAAGAGCTTTATTTAGAGAACAACAAAACAATTTCGGGGAGTACTCCTAACATTAGCCAACATAAAAGAGATGTTTCTTCTAACACTCTTCAACAAGAAGTCAGCTTGCCCTCACCACTGAACAGAAAAGAGAGTATTGAGACAGAAACGAATCTTGGAAATGGCAGTGTAGCAATTGGAATAACTTCTCAGCCAGTAGACAAGCCAGCTGATTCTCATTCTAAAGATCCCAAGTCATCATTAAGTCCAGCAACAAATGAGGAGGAACAGGATGAGAAAGCAAAGGTACCAGTTATTCAGCAGAAAGGGCGGTTCAAAGTTACTTCGGAGAATGTCGATGCAGAAAAGGCAACTTCACTCCCTATTCTGCAAAAAAGTCACAGTATGCAGGTGATGACCTCAAATTCTGCTACTCTTCCTTGTAATCCACCAGCTCCTCTGCTGACACCTCTACCTTCAATATCCGATGCTTTACCGATCAACACTAGAGATGCTATACCAATCAACACTAGATCTTCTATGTTTCCTGTGTTGCAGTCTATTTTGCAGACAAATATTGCTCAAAGGGAGGATATTTTGACTCTAATGAGGCAAATCTCACTTGGAGATTTTCCAGCCGAGGGTGTAGCCGATGTCTCTTCGACACATATTCCAGCAACGGAGAAATCCTTGCTTGAAGCAGCTCATGAAAGGGAGAAGGATTTACTCAACGAAGTTTCTGATTTACAGTGGAGGATATTACGTGCGAGAGAAGAAATCCAAAGATTAAAATCAAACAATGCAGGTTAA 2106 41.41 MEKKAYPIGEEFYVLYEEVGQGVSASVRRALCKPLNEIVAIKILDFERDNCDLVRIFREVQTMILVDHPNVLKSHCSFVHGHDLWIVMPYMSGGSCLHILKAAYPDGFEEVVIATILREVLKGVEYLHNHGHIHRDIKAGNVLIDSRGAIKLGDFGVSACLFDSGDRQRVRNTFVGTPCWMAPEVMEQLNGYDFKADIWSFAITGLELAHGHAPFSKYPPMKVLMMTLQNAPPGLDYERDKKFSKSFKQMIASCLVKDPSKRPSASKLLKHAFFKQARSSDYIARTLLEGLPVFGDRIQALKRKEEDMLAQKKMPYGKKEELSQNEYKRGISVWNFNIDDLKAQASLIQEFEESISEIAEVGSSNSLSTLDGQEKKLQCQNSSESSDIEENGMTRRQPSMKVNDTVDCKKSINDSAITSSCSQQQSSPHNDNQIESGSTEELYLENNKTISGSTPNISQHKRDVSSNTLQQEVSLPSPLNRKESIETETNLGNGSVAIGITSQPVDKPADSHSKDPKSSLSPATNEEEQDEKAKVPVIQQKGRFKVTSENVDAEKATSLPILQKSHSMQVMTSNSATLPCNPPAPLLTPLPSISDALPINTRDAIPINTRSSMFPVLQSILQTNIAQREDILTLMRQISLGDFPAEGVADVSSTHIPATEKSLLEAAHEREKDLLNEVSDLQWRILRAREEIQRLKSNNAG 701
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26901591 26910166 + Sed0017073.1 Sed05g1387 714013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1387 701 MobiDBLite consensus disorder prediction 449 500 - -
Sed05g1387 701 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 1 700 IPR047173 GO:0043539(InterPro)
Sed05g1387 701 MobiDBLite consensus disorder prediction 449 538 - -
Sed05g1387 701 SUPERFAMILY Protein kinase-like (PK-like) 13 275 IPR011009 -
Sed05g1387 701 ProSiteProfiles Protein kinase domain profile. 13 274 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g1387 701 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524(InterPro)
Sed05g1387 701 CDD STKc_OSR1_SPAK 13 274 - -
Sed05g1387 701 Gene3D Transferase(Phosphotransferase) domain 1 94 326 - -
Sed05g1387 701 MobiDBLite consensus disorder prediction 366 403 - -
Sed05g1387 701 FunFam serine/threonine-protein kinase BLUS1 isoform X1 94 327 - -
Sed05g1387 701 Coils Coil 671 698 - -
Sed05g1387 701 SMART serkin_6 13 274 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g1387 701 FunFam Serine/threonine-protein kinase BLUS1 2 90 - -
Sed05g1387 701 Pfam Protein kinase domain 13 274 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g1387 701 MobiDBLite consensus disorder prediction 524 538 - -
Sed05g1387 701 Gene3D Phosphorylase Kinase; domain 1 2 89 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0925 Sed-Chr4:8510267 Sed05g1387 Sed-Chr5:26901591 2.30E-138 dispersed
Sed04g0926 Sed-Chr4:8510267 Sed05g1387 Sed-Chr5:26901591 2.20E-124 dispersed
Sed05g1387 Sed-Chr5:26901591 Sed06g0543 Sed-Chr6:4774716 1.20E-147 dispersed
Sed05g1387 Sed-Chr5:26901591 Sed05g1388 Sed-Chr5:26902759 0.00E+00 tandem
Sed05g1387 Sed-Chr5:26901591 Sed06g2046 Sed-Chr6:44514901 2.00E-301 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79161 PF00069 Pkinase 1.60E-58 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1387 K08835 - csv:101211076 1133.24