Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1388 ATGATCTTGGTTGACCACCCAAATGTCCTTAAATCACACTGCTCCTTTGTCCATGGCCATGATTTGTGGATTGTTATGCCCTACATGTCTGGAGGTTCTTGTCTTCACATATTGAAGGCTGCATATCCTGATGGTTTCGAGGAAGTGGTCATAGCAACAATATTACGAGAAGTATTGAAAGGGGTTGAATATCTTCATAATCATGGACACATTCATAGGGATATAAAAGCAGGGAATGTTCTTATTGATTCACGAGGTGCAATCAAGCTTGGGGATTTTGGTGTTTCTGCTTGTCTTTTTGATTCAGGAGATAGGCAGCGTGTGAGGAATACATTCGTGGGGACACCATGCTGGATGGCACCTGAGGTTATGGAGCAACTAAATGGTTATGACTTCAAGGCTGACATCTGGTCTTTTGCCATAACTGGGTTAGAGCTCGCCCATGGGCATGCTCCTTTCTCGAAATATCCTCCGATGAAGGTACTGATGATGACCTTGCAAAATGCACCTCCAGGCCTTGATTATGAGAGGGATAAAAAGTTCTCAAAGTCTTTTAAGCAGATGATTGCTAGTTGCTTGGTAAAAGATCCTTCGAAACGACCTTCTGCAAGTAAGCTGCTAAAGCATGCATTTTTTAAGCAAGCGCGATCAAGTGATTATATTGCACGTACCCTTTTGGAAGGGCTACCTGTTTTTGGTGATCGTATACAAGCGCTTAAGAGAAAGGAAGAGGATATGCTTGCCCAAAAGAAAATGCCATATGGAAAGAAGGAAGAATTATCACAGAATGAATATAAACGAGGAATCAGTGTATGGAACTTCAATATTGATGATTTAAAGGCTCAGGCATCTCTGATTCAAGAATTTGAAGAATCAATAAGTGAAATCGCTGAAGTTGGGAGCTCAAATTCCTTATCTACACTTGATGGACAAGAAAAGAAATTACAATGCCAAAATTCTTCAGAAAGTTCAGATATTGAAGAGAATGGCATGACGCGGAGACAACCCTCCATGAAAGTTAATGATACAGTAGATTGTAAAAAATCTATCAATGACTCGGCAATCACAAGTTCTTGCTCTCAACAACAATCTTCACCCCACAATGATAATCAAATTGAGAGTGGTTCCACTGAAGAGCTTTATTTAGAGAACAACAAAACAATTTCGGGGAGTACTCCTAACATTAGCCAACATAAAAGAGATGTTTCTTCTAACACTCTTCAACAAGAAGTCAGCTTGCCCTCACCACTGAACAGAAAAGAGAGTATTGAGACAGAAACGAATCTTGGAAATGGCAGTGTAGCAATTGGAATAACTTCTCAGCCAGTAGACAAGCCAGCTGATTCTCATTCTAAAGATCCCAAGTCATCATTAAGTCCAGCAACAAATGAGGAGGAACAGGATGAGAAAGCAAAGGTACCAGTTATTCAGCAGAAAGGGCGGTTCAAAGTTACTTCGGAGAATGTCGATGCAGAAAAGGCAACTTCACTCCCTATTCTGCAAAAAAGTCACAGTATGCAGGTGATGACCTCAAATTCTGCTACTCTTCCTTGTAATCCACCAGCTCCTCTGCTGACACCTCTACCTTCAATATCCGATGCTTTACCGATCAACACTAGAGATGCTATACCAATCAACACTAGATCTTCTATGTTTCCTGTGTTGCAGTCTATTTTGCAGACAAATATTGCTCAAAGGGAGGATATTTTGACTCTAATGAGGCAAATCTCACTTGGAGATTTTCCAGCCGAGGGTGTAGCCGATGTCTCTTCGACACATATTCCAGCAACGGAGAAATCCTTGCTTGAAGCAGCTCATGAAAGGGAGAAGGATTTACTCAACGAAGTTTCTGATTTACAGTGGAGGATATTACGTGCGAGAGAAGAAATCCAAAGATTAAAATCAAACAATGCAGGTTAA 1920 40.83 MILVDHPNVLKSHCSFVHGHDLWIVMPYMSGGSCLHILKAAYPDGFEEVVIATILREVLKGVEYLHNHGHIHRDIKAGNVLIDSRGAIKLGDFGVSACLFDSGDRQRVRNTFVGTPCWMAPEVMEQLNGYDFKADIWSFAITGLELAHGHAPFSKYPPMKVLMMTLQNAPPGLDYERDKKFSKSFKQMIASCLVKDPSKRPSASKLLKHAFFKQARSSDYIARTLLEGLPVFGDRIQALKRKEEDMLAQKKMPYGKKEELSQNEYKRGISVWNFNIDDLKAQASLIQEFEESISEIAEVGSSNSLSTLDGQEKKLQCQNSSESSDIEENGMTRRQPSMKVNDTVDCKKSINDSAITSSCSQQQSSPHNDNQIESGSTEELYLENNKTISGSTPNISQHKRDVSSNTLQQEVSLPSPLNRKESIETETNLGNGSVAIGITSQPVDKPADSHSKDPKSSLSPATNEEEQDEKAKVPVIQQKGRFKVTSENVDAEKATSLPILQKSHSMQVMTSNSATLPCNPPAPLLTPLPSISDALPINTRDAIPINTRSSMFPVLQSILQTNIAQREDILTLMRQISLGDFPAEGVADVSSTHIPATEKSLLEAAHEREKDLLNEVSDLQWRILRAREEIQRLKSNNAG 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26902759 26910166 + Sed0017073.2 Sed05g1388 714014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1388 639 Gene3D Transferase(Phosphotransferase) domain 1 32 264 - -
Sed05g1388 639 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 1 638 IPR047173 GO:0043539(InterPro)
Sed05g1388 639 SMART serkin_6 1 212 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g1388 639 MobiDBLite consensus disorder prediction 304 341 - -
Sed05g1388 639 MobiDBLite consensus disorder prediction 462 476 - -
Sed05g1388 639 Pfam Protein kinase domain 4 212 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed05g1388 639 FunFam serine/threonine-protein kinase BLUS1 isoform X1 32 265 - -
Sed05g1388 639 SUPERFAMILY Protein kinase-like (PK-like) 3 213 IPR011009 -
Sed05g1388 639 MobiDBLite consensus disorder prediction 387 438 - -
Sed05g1388 639 Gene3D Phosphorylase Kinase; domain 1 1 30 - -
Sed05g1388 639 Coils Coil 609 636 - -
Sed05g1388 639 MobiDBLite consensus disorder prediction 387 476 - -
Sed05g1388 639 ProSiteProfiles Protein kinase domain profile. 1 212 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1388 Sed-Chr5:26902759 Sed06g2046 Sed-Chr6:44514901 7.00E-269 dispersed
Sed05g1387 Sed-Chr5:26901591 Sed05g1388 Sed-Chr5:26902759 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79162 PF00069 Pkinase 4.70E-48 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1388 K08835 - csv:101211076 1029.24