Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1392 ATGGCGGATCTGAAAGAGCGGTTGCTTCCTCTGAAACCTGCCTCTGCTATAAATGTTAGGGAGGCTATTAATAATCGACCATCGGCGTCCGGAAGGGTTCCTTTTCAAGGTGTGGATGTTCTAGGTCTGAAGAAGCGAGGCCAGGGTCTTAGATCTTGGATTCGGGTTGATTCCTTTGGGAATTCTCAGATTATTGAGGTTGATAAGTTCACTATGATGCGTCGTTGTGATCTACCTGCACGTGATTTACGCTTGCTTGATCCTTTGTTTGTTTACCCGTCAACAATTCTCGGTAGAGAGAAGGCTATTGTGGTCAATCTAGAGCAGATTAGATGTATCATAACAGCTGAAGAAGTTTTGCTATTGAATTCCCTTGATAGTTGTGTATTGCAGTATGTGGTAGAGCTACAAAGGCGCCTAAAAACCACTGGGGTTGAGGAGGTTTGGAAGAATGATGGAAATCATGGAGTTGAATTACGAAGAAGGGGAAGTAGGAATTTCGATAATGTATTTGGAAACACCTCTCCTGATTATTTGCCCTTTGAGTTTAGAGCTTTAGAAGTTGCTTTGGAGGCAGCTTGTACGTTTCTTGATTCCCAGGCTGCAGAATTAGAAATCGAGGCATACCCGTTGCTTGATGAACTCACTTCAAAAATCAGTACATTAAATTTGGAGCGCGTTCGTCGTTTGAAGAGCAGACTTGTTGCTCTGACTCGTAGGGTTCAGAAGGTTAGGGATGAAATAGAACAGCTCATGGATGATGATGGAGATATGGCAGAAATGTACCTCACGGAGAAGAAAATGAGAATGGAGTCCTTTGTTTATGGTGATCAGTCTGTGAGTGGATACAGATCAATTGAAGGAGCATCTATTTCTGCTCCTGTTTCTCCTGTATCTTCACCGCCTGAAACTCGCAAGCTCGAGAAGAGCCTGAGCATGGCAAGGAGCCGGCTCGAAAGCATGAGAAGTTCAGAAAGTGCCACTGAAAATATAGAGGAACTCGAGATGCTTCTCGAAGCATATTTTGTTGTCATTGATAGCACCCTGAACAAGTTGACATCGTTGAAGGAGTACATCGATGACACAGAAGATTTCATCAACATCCAGTTGGATAACGTACGGAATCAGTTGATCCAATTCGAGCTGCTACTCACAACTGCAACATTTGTTGTTGCCATTTTTGGTGTGGTAGCTGGAGTTTTTGGCATGAATTTTGACATACCAATGTTTGGGAATCCTGAGGCATTCAAATGGGTACTTGCAATTACAGGGGTAAGTGGAATAATCATATTTGCTGCATTTGTTTGGTTTTTCAGATACAAAAGACTGATGCCACTTTAA 1341 42.73 MADLKERLLPLKPASAINVREAINNRPSASGRVPFQGVDVLGLKKRGQGLRSWIRVDSFGNSQIIEVDKFTMMRRCDLPARDLRLLDPLFVYPSTILGREKAIVVNLEQIRCIITAEEVLLLNSLDSCVLQYVVELQRRLKTTGVEEVWKNDGNHGVELRRRGSRNFDNVFGNTSPDYLPFEFRALEVALEAACTFLDSQAAELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKMRMESFVYGDQSVSGYRSIEGASISAPVSPVSSPPETRKLEKSLSMARSRLESMRSSESATENIEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGVFGMNFDIPMFGNPEAFKWVLAITGVSGIIIFAAFVWFFRYKRLMPL 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26967057 26971386 + Sed0024798.1 Sed05g1392 714018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1392 446 Gene3D Magnesium transport protein CorA, transmembrane region 127 377 - -
Sed05g1392 446 FunFam Magnesium transporter MRS2-1 384 444 - -
Sed05g1392 446 Pfam Magnesium transporter MRS2-like 65 269 - -
Sed05g1392 446 CDD Mrs2_Mfm1p-like 53 443 IPR039204 -
Sed05g1392 446 Gene3D Magnesium transport protein CorA, transmembrane region 384 444 - -
Sed05g1392 446 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 383 436 IPR045863 -
Sed05g1392 446 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 36 443 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
Sed05g1392 446 Coils Coil 227 254 - -
Sed05g1392 446 Gene3D - 41 124 - -
Sed05g1392 446 FunFam Magnesium transporter MRS2-1 41 124 - -
Sed05g1392 446 Pfam CorA-like Mg2+ transporter protein 306 434 IPR002523 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1392 Sed-Chr5:26967057 Sed10g1946 Sed-Chr10:36189412 7.70E-89 dispersed
Sed03g2573 Sed-Chr3:41095198 Sed05g1392 Sed-Chr5:26967057 4.80E-108 transposed
Sed05g1392 Sed-Chr5:26967057 Sed06g2048 Sed-Chr6:44545785 1.40E-231 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1392 K16075 - csv:101217419 764.222