Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1392 ATGGCGGATCTGAAAGAGCGGTTGCTTCCTCTGAAACCTGCCTCTGCTATAAATGTTAGGGAGGCTATTAATAATCGACCATCGGCGTCCGGAAGGGTTCCTTTTCAAGGTGTGGATGTTCTAGGTCTGAAGAAGCGAGGCCAGGGTCTTAGATCTTGGATTCGGGTTGATTCCTTTGGGAATTCTCAGATTATTGAGGTTGATAAGTTCACTATGATGCGTCGTTGTGATCTACCTGCACGTGATTTACGCTTGCTTGATCCTTTGTTTGTTTACCCGTCAACAATTCTCGGTAGAGAGAAGGCTATTGTGGTCAATCTAGAGCAGATTAGATGTATCATAACAGCTGAAGAAGTTTTGCTATTGAATTCCCTTGATAGTTGTGTATTGCAGTATGTGGTAGAGCTACAAAGGCGCCTAAAAACCACTGGGGTTGAGGAGGTTTGGAAGAATGATGGAAATCATGGAGTTGAATTACGAAGAAGGGGAAGTAGGAATTTCGATAATGTATTTGGAAACACCTCTCCTGATTATTTGCCCTTTGAGTTTAGAGCTTTAGAAGTTGCTTTGGAGGCAGCTTGTACGTTTCTTGATTCCCAGGCTGCAGAATTAGAAATCGAGGCATACCCGTTGCTTGATGAACTCACTTCAAAAATCAGTACATTAAATTTGGAGCGCGTTCGTCGTTTGAAGAGCAGACTTGTTGCTCTGACTCGTAGGGTTCAGAAGGTTAGGGATGAAATAGAACAGCTCATGGATGATGATGGAGATATGGCAGAAATGTACCTCACGGAGAAGAAAATGAGAATGGAGTCCTTTGTTTATGGTGATCAGTCTGTGAGTGGATACAGATCAATTGAAGGAGCATCTATTTCTGCTCCTGTTTCTCCTGTATCTTCACCGCCTGAAACTCGCAAGCTCGAGAAGAGCCTGAGCATGGCAAGGAGCCGGCTCGAAAGCATGAGAAGTTCAGAAAGTGCCACTGAAAATATAGAGGAACTCGAGATGCTTCTCGAAGCATATTTTGTTGTCATTGATAGCACCCTGAACAAGTTGACATCGTTGAAGGAGTACATCGATGACACAGAAGATTTCATCAACATCCAGTTGGATAACGTACGGAATCAGTTGATCCAATTCGAGCTGCTACTCACAACTGCAACATTTGTTGTTGCCATTTTTGGTGTGGTAGCTGGAGTTTTTGGCATGAATTTTGACATACCAATGTTTGGGAATCCTGAGGCATTCAAATGGGTACTTGCAATTACAGGGGTAAGTGGAATAATCATATTTGCTGCATTTGTTTGGTTTTTCAGATACAAAAGACTGATGCCACTTTAA 1341 42.73 MADLKERLLPLKPASAINVREAINNRPSASGRVPFQGVDVLGLKKRGQGLRSWIRVDSFGNSQIIEVDKFTMMRRCDLPARDLRLLDPLFVYPSTILGREKAIVVNLEQIRCIITAEEVLLLNSLDSCVLQYVVELQRRLKTTGVEEVWKNDGNHGVELRRRGSRNFDNVFGNTSPDYLPFEFRALEVALEAACTFLDSQAAELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKMRMESFVYGDQSVSGYRSIEGASISAPVSPVSSPPETRKLEKSLSMARSRLESMRSSESATENIEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGVFGMNFDIPMFGNPEAFKWVLAITGVSGIIIFAAFVWFFRYKRLMPL 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 26967057 26971386 + Sed0024798.1 Sed05g1392 714018

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1392 446 Gene3D Magnesium transport protein CorA, transmembrane region 127 377 - -
Sed05g1392 446 FunFam Magnesium transporter MRS2-1 384 444 - -
Sed05g1392 446 Pfam Magnesium transporter MRS2-like 65 269 - -
Sed05g1392 446 CDD Mrs2_Mfm1p-like 53 443 IPR039204 -
Sed05g1392 446 Gene3D Magnesium transport protein CorA, transmembrane region 384 444 - -
Sed05g1392 446 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 383 436 IPR045863 -
Sed05g1392 446 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 36 443 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
Sed05g1392 446 Coils Coil 227 254 - -
Sed05g1392 446 Gene3D - 41 124 - -
Sed05g1392 446 FunFam Magnesium transporter MRS2-1 41 124 - -
Sed05g1392 446 Pfam CorA-like Mg2+ transporter protein 306 434 IPR002523 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)|GO:0055085(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1392 K16075 - - csv:101217419 764.222
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1392 Sed-Chr5:26967057 Sed10g1946 Sed-Chr10:36189412 7.70E-89 dispersed
Sed03g2573 Sed-Chr3:41095198 Sed05g1392 Sed-Chr5:26967057 4.80E-108 transposed
Sed05g1392 Sed-Chr5:26967057 Sed06g2048 Sed-Chr6:44545785 1.40E-231 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed06g2048 . 1 447 MRS2 Gene Family AT1G16010 83.4 1.6e-203 706.4
Sed05g1392 . 1 446 MRS2 Gene Family AT1G16010 82.3 8.2e-200 694.1
Sed03g2573 . 6 380 MRS2 Gene Family AT1G16010 53.1 8.7e-109 391.7
Sed04g1953 . 1 366 MRS2 Gene Family AT5G64560 80.2 1.3e-156 550.4
Sed09g0722 . 1 361 MRS2 Gene Family AT5G64560 79.6 1.3e-156 550.4
Sed05g0080 . 1 364 MRS2 Gene Family AT5G64560 70.2 1.4e-131 467.2
Sed05g2636 . 21 495 MRS2 Gene Family AT3G19640 66.5 1.3e-158 557.4
Sed10g1946 . 39 494 MRS2 Gene Family AT3G19640 66.7 5.7e-154 542.0
Sed04g1594 . 3 446 MRS2 Gene Family AT3G58970 65.8 1.4e-146 517.3
Sed13g0547 . 55 447 MRS2 Gene Family AT3G58970 68.0 2.7e-139 493.0
Sed13g0549 . 24 359 MRS2 Gene Family AT3G58970 66.8 2.6e-113 406.8
Sed13g0548 . 55 358 MRS2 Gene Family AT3G58970 65.3 7.3e-100 362.1
Sed13g0550 . 24 270 MRS2 Gene Family AT3G58970 62.9 6.9e-74 275.8
Sed03g2573 . 6 380 MRS2 Gene Family AT2G03620 67.9 5.7e-134 475.3
Sed06g2048 . 13 447 MRS2 Gene Family AT2G03620 53.0 5.6e-113 405.6
Sed05g1392 . 11 446 MRS2 Gene Family AT2G03620 53.4 3.6e-112 402.9
Sed04g1953 . 1 328 MRS2 Gene Family AT5G09690 74.7 4.4e-126 448.7
Sed09g0722 . 1 323 MRS2 Gene Family AT5G09690 73.2 3.8e-122 435.6
Sed05g0080 . 1 326 MRS2 Gene Family AT5G09690 65.7 4.1e-108 389.0
Sed05g1392 . 40 382 MRS2 Gene Family AT5G09690 51.3 2.6e-78 290.0
Sed04g1953 . 12 288 MRS2 Gene Family AT5G09720 65.5 4.3e-88 322.4
Sed09g0722 . 1 283 MRS2 Gene Family AT5G09720 64.2 7.4e-88 321.6
Sed05g0080 . 11 286 MRS2 Gene Family AT5G09720 56.9 6.7e-73 271.9
Sed06g2048 . 1 447 MRS2 Gene Family AT1G80900 82.1 1.2e-198 690.3
Sed05g1392 . 1 446 MRS2 Gene Family AT1G80900 81.4 5.5e-196 681.4
Sed03g2573 . 6 380 MRS2 Gene Family AT1G80900 53.0 4.8e-107 386.0
Sed03g1863 . 105 444 MRS2 Gene Family AT5G22830 83.2 3.4e-156 549.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004467 2 3 1 2 1 1 2 1 1 1 1 1 1 2 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 2 42