Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed05g1398 | ATGCAGCCAAGAAGGAAGCTGAACAGAAATGGGAGGAGAGAGAAAATGAAAAGAATGGAGAGGAAGGATAGAATGGCTGCTGGAGGGTCTAATTCCGTGCAGCCACAGTTCTTATCTAGGGCTGGAGATGAGAGTTTTTCGCATGCGCCATTGATCGAAAACCCGGAAACCAATCAGATTGTTGTTCCTGATAAAAAAAGCTGGAAGAACCTTTTTGCATACATGGGCCCGGGGTTTCTTGTTTCTATTGCTTATATTGATCCTGGGAATTTTGAAACTGATCTACAATCTGGAGCACAGTACAAGTATGAGTTGCTTTGGATCATATTAGTGGCTTCCTGTGCTGCCCTCATCATTCAATCCTTAGCAGCAAATCTAGGGGTTGTCACAGGAAAACATTTAGCAGAGCACTGTAAAGCAGAGTATCCCAAGGTGCAAAATTTCATCCTATGGGTCCTTGCTGAAATTTCAATAGTTGCATGTGATATTCCGGAAGTCATAGGAACCGCCTTTGCATTAAATATGCTCTTCAGCATTCCTGTTTGGTGCGGTGTTCTGGTTACGGGGCTTAGTACACTACTACTTCTTGCACTTCAGCAATATGGGATTAGGAAGCTTGAGTTCTTGATTGCACTTCTTGTATTGACAATTGCAATTTGCTTCTTCCTGGAGCTGGCTTATGCACGGCCCGATGTTGGAGAAATTTTTTATGGGTTATTTGTCCCTCAATTAAAAGGAAGTGGTGCTACTGGTCTTGCAATCTCACTTCTTGGTGCTATGGTTATGCCACACAATCTCTTTCTTCACTCAGCACTGGTGCTCTCTAGGAAAATACCCCGATCCATTTCCGGCATCAAGGAAGCTTGCAGATTTTATATGATAGAGAGTGGCTTTGCTCTTTTGATAGCTTTCCTCATTAATGTGTCGGTCATTTCGGTTAGTGGTGCAGTTTGCAATTCCCCAAATCTAAATAAGGCGGATCAAATGAGCTGTAGTGACTTGAACTTAAATGAAGCTTCATTTTTATTGAGAAATGTATTGGGTAAATGGAGTTCCAAAATTTTTGCTATTGCTTTGTTAGCATCTGGCCAGAGTTCTACCATAACAGGAACATATGCAGGACAGTTTGTTATGCAGGGGTTTCTTGATTTGAAACTGACACCATGGGTCAGAAACTTCTTAACTCGAAGCTTGGCTATTGTTCCTAGTTTGATTGTTGCGATCGTCGGTGGGTCTTCTGGGGCGGGGAAGCTCATCATTATTGCGTCGATGATTTTGTCATTTGAACTCCCTTTTGCTCTCATTCCCCTTCTGAAGTTTACAAGCAGCCCATCCAAGATGGGACCGCATGTCAACTCTACCGCGATTACGGTACTGACATGGATCATCGGTTTTCTCATCATGGCTATAAATATATACTACCTCATGACCGGGTTTATCCACGTGCTTTTTCACAGCAATCTGAAACTCGTAGCAGTGGTCTTCATAGGAATACTAGGATTTTCAGCCATGGCAATATATTTAGCTGGAATTGCTTATCTGGTTTTGAAAAAGACCAAGGAAACCACTCATCTCATAGCACTAACGACAGAAGAAAGTCGACAACTGAGCATCGAACGGAGTAATACATCGGGATATAATATTCCGAGCGAAGATATTGTAAGCATGCAGTTGCCCCAAAGAAGTAGAACAGCCAATGATGTAAACTGA | 1710 | 42.4 | MQPRRKLNRNGRREKMKRMERKDRMAAGGSNSVQPQFLSRAGDESFSHAPLIENPETNQIVVPDKKSWKNLFAYMGPGFLVSIAYIDPGNFETDLQSGAQYKYELLWIILVASCAALIIQSLAANLGVVTGKHLAEHCKAEYPKVQNFILWVLAEISIVACDIPEVIGTAFALNMLFSIPVWCGVLVTGLSTLLLLALQQYGIRKLEFLIALLVLTIAICFFLELAYARPDVGEIFYGLFVPQLKGSGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSISGIKEACRFYMIESGFALLIAFLINVSVISVSGAVCNSPNLNKADQMSCSDLNLNEASFLLRNVLGKWSSKIFAIALLASGQSSTITGTYAGQFVMQGFLDLKLTPWVRNFLTRSLAIVPSLIVAIVGGSSGAGKLIIIASMILSFELPFALIPLLKFTSSPSKMGPHVNSTAITVLTWIIGFLIMAINIYYLMTGFIHVLFHSNLKLVAVVFIGILGFSAMAIYLAGIAYLVLKKTKETTHLIALTTEESRQLSIERSNTSGYNIPSEDIVSMQLPQRSRTANDVN | 569 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 27237670 | 27243607 | + | Sed0020297.1 | Sed05g1398 | 714024 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed05g1398 | 569 | Hamap | Divalent metal cation transporter MntH [mntH]. | 56 | 479 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Sed05g1398 | 569 | NCBIfam | Nramp family divalent metal transporter | 76 | 443 | - | - | |
| Sed05g1398 | 569 | Pfam | Natural resistance-associated macrophage protein-like | 91 | 453 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Sed05g1398 | 569 | PANTHER | SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER | 55 | 523 | IPR001046 | GO:0005384(PANTHER)|GO:0015086(PANTHER)|GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Sed05g1398 | 569 | NCBIfam | metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family | 70 | 445 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Sed05g1398 | 569 | PRINTS | Natural resistance-associated macrophage protein signature | 178 | 197 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Sed05g1398 | 569 | PRINTS | Natural resistance-associated macrophage protein signature | 203 | 224 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Sed05g1398 | 569 | PRINTS | Natural resistance-associated macrophage protein signature | 363 | 382 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Sed05g1398 | 569 | PRINTS | Natural resistance-associated macrophage protein signature | 150 | 176 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Sed05g1398 | 569 | PRINTS | Natural resistance-associated macrophage protein signature | 391 | 408 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Sed05g1398 | 569 | PRINTS | Natural resistance-associated macrophage protein signature | 253 | 276 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Sed05g1398 | 569 | PRINTS | Natural resistance-associated macrophage protein signature | 423 | 442 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
| Sed05g1398 | 569 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed05g1398 | Sed-Chr5:27237670 | Sed06g2053 | Sed-Chr6:44610069 | 1.00E-266 | dispersed | |
| Sed01g3098 | Sed-Chr1:42187146 | Sed05g1398 | Sed-Chr5:27237670 | 1.80E-150 | transposed | |
| Sed05g1398 | Sed-Chr5:27237670 | Sed06g2052 | Sed-Chr6:44610069 | 1.00E-266 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed05g1398 | K21398 | - | csv:101209649 | 943.725 |