Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1400 ATGCCGATCGATTCCTTAGAAGCCTCTGACCAAATCGTGTGCGTCACGGGCGCTGGAGGGTTCATTGCTTCTTGGCTTGTGAAGCTTCTTCTTGAGAAGGGCTACACTGTTAGAGGAACGGTTAGAAATGCTGATGATCAAAAGAACTCTCATTTGAAAGACTTGGAAGGAGCTCATGAGAGGCTGTCTTTGTTTAGTGCTGATCTTCTTGATTTTGATAGCCTCAAAGCTGCCATTGTGGGCTGTCATGGTGTTTTCCACACCGCGTCTCCGGTCACCGACGATCCCGAAAAAGTGGAGGAAGCCATAATCGGGACAAAGAACGTCGTGGCCGCTGCTGCCGAAGCAAAAGTCCGACGAGTGGTGTTCACGTCATCGATCGGAACCGTCTACATGAATCCTAACCGGAGGCCGGACACAGTGAATTGGTATTGCTATGCAAAGACAATAGCAGAGCAAACAGCATGGGAAGTAGCAAAAGAAAGAAATGTTGATTTGGTAGTGGTAAATCCAATGTTGGTGTTGGGGCCATTGTTGCAAGCAGGTGTGAATGCAAGTGTGGTTCATATAATGAAGTATCTGACAGGATCTGCTAAGACATATGTGAATGCTGTACAAGGTTACGTTGATGTTAAGGATGTCGCAAAAGCTCATCTTTTGGTTTATGAAACTCCTTCAGCCTCGGGTAGATATATCTGTGTCGAAAGCATGCTTCACCAAGGAGATTTGGTCGATATTCTTTCCGGATTCTTTCCCGAATACCCTCTTCCCACCAAGTGTTCTGATGAAGTGAATCCAAAGAAGAAGCCTTACAAATACACAATTGAGAAACTAAAGTCATTGGGAATGGAGTTCACTCCAATCAAACAATGCATTTATGAAACTGTGAAGAGCTTGCAAGAAAAGGGCCATCTTCCTCTTCCCTCCCAACTAAAACATTGA 942 45.01 MPIDSLEASDQIVCVTGAGGFIASWLVKLLLEKGYTVRGTVRNADDQKNSHLKDLEGAHERLSLFSADLLDFDSLKAAIVGCHGVFHTASPVTDDPEKVEEAIIGTKNVVAAAAEAKVRRVVFTSSIGTVYMNPNRRPDTVNWYCYAKTIAEQTAWEVAKERNVDLVVVNPMLVLGPLLQAGVNASVVHIMKYLTGSAKTYVNAVQGYVDVKDVAKAHLLVYETPSASGRYICVESMLHQGDLVDILSGFFPEYPLPTKCSDEVNPKKKPYKYTIEKLKSLGMEFTPIKQCIYETVKSLQEKGHLPLPSQLKH 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27311615 27313057 - Sed0009541.1 Sed05g1400 714026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1400 313 FunFam Cinnamoyl-CoA reductase 1 6 312 - -
Sed05g1400 313 Gene3D - 4 313 - -
Sed05g1400 313 CDD FR_SDR_e 13 282 - -
Sed05g1400 313 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 12 298 IPR050425 GO:0016616(PANTHER)
Sed05g1400 313 Pfam NAD dependent epimerase/dehydratase family 13 228 IPR001509 -
Sed05g1400 313 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 9 300 IPR036291 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1400 Sed-Chr5:27311615 Sed05g1402 Sed-Chr5:27325060 1.90E-174 dispersed
Sed05g1400 Sed-Chr5:27311615 Sed05g1401 Sed-Chr5:27318336 5.10E-164 tandem
Sed05g1400 Sed-Chr5:27311615 Sed06g2054 Sed-Chr6:44617769 5.90E-144 wgd
Sed05g1400 Sed-Chr5:27311615 Sed07g0750 Sed-Chr7:5602675 2.40E-129 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1400 K09753 - csv:116401652 540.036