Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1401 ATGCCGATCGATTCCTTAGAAGTCTCTGACCAAATCGTGTGCGTCACGGGCGCTGGAGGGTTCATTGCTTCTTGGCTTGTGAAGCTTCTTCTTGAGAAGGGCTACACTGTTAGAGGAACGGTTAGACATGCTGATGATCAAAAGAACGCTCATTTGAAAGACTTGGAAGGAGCTCATGAGAGGCTGTCTTTGTTTAGTGCTGATCTTCTTGATTTTGATAGCCTCAAAGCTGCCATTGTGGGCTGTCATGGTGTTTTCCACACCGCGTCTCCGGTCACCGACGATCCCGAAAAAGTGGAGGAAGCCATAATCGGGACAAAGAACGTCGTGGCCGCTGCTGCCGAAGCAAAAGTCCGACGAGTGGTGTTCACGTCATCGATCGGAACCGTCTACATGAATCCTAACCGGAGCCCGGACACAGTGAATTGGTATTGCTATGCAAAGACAATAGCAGAGCAAACAGCATGGGAAGTAGCAAAAGAAAGAAATGTTGATTTGGTAGTGGTAAATCCAATGTTGGTTGTGGTTCATATAATGAAGTATCTGACAGGATCTGCTAAGACATATGTGAATGCTGTACAAGGTTACGTTGATGTTAAGGATGTCGCAAAAGCTCATCTTTTGGTTTATGAAACTCCTTCAGCCTCGGGTAGATATATCTGTGTCGAAAGCATGCTTCACCGCGGAGATTTGGTCGATATTCTTTCCGGATTCTTTCCCGAATACCTCTTCCCACCAAGTAAGTGTTCTGATGAAGTGAATCCAAAGAAGAAGCCTTACAAATACACAATTGAGAAACTAAAGTCATTGGGAATGGAGTTCACTCCAATCAAACAATGCATTTATGAAACTGTGAAGAGCTTGCAAGAAAAGGGCCATCTTCCTCTTCCTTCCCAACTAAAACATTGA 909 44.77 MPIDSLEVSDQIVCVTGAGGFIASWLVKLLLEKGYTVRGTVRHADDQKNAHLKDLEGAHERLSLFSADLLDFDSLKAAIVGCHGVFHTASPVTDDPEKVEEAIIGTKNVVAAAAEAKVRRVVFTSSIGTVYMNPNRSPDTVNWYCYAKTIAEQTAWEVAKERNVDLVVVNPMLVVVHIMKYLTGSAKTYVNAVQGYVDVKDVAKAHLLVYETPSASGRYICVESMLHRGDLVDILSGFFPEYLFPPSKCSDEVNPKKKPYKYTIEKLKSLGMEFTPIKQCIYETVKSLQEKGHLPLPSQLKH 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27318336 27319775 - Sed0009899.1 Sed05g1401 714027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1401 302 CDD FR_SDR_e 13 271 - -
Sed05g1401 302 Pfam NAD dependent epimerase/dehydratase family 13 215 IPR001509 -
Sed05g1401 302 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 12 287 IPR050425 GO:0016616(PANTHER)
Sed05g1401 302 FunFam Dihydroflavonol reductase 10 296 - -
Sed05g1401 302 Gene3D - 4 302 - -
Sed05g1401 302 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 8 289 IPR036291 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1401 Sed-Chr5:27318336 Sed05g1403 Sed-Chr5:27331511 5.70E-160 dispersed
Sed05g1400 Sed-Chr5:27311615 Sed05g1401 Sed-Chr5:27318336 5.10E-164 tandem
Sed05g1401 Sed-Chr5:27318336 Sed05g1402 Sed-Chr5:27325060 7.60E-165 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1401 K09753 - csv:116401668 492.656