Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1402 ATGCCGATCGATTCCTTAGAAGTCTCTGACCAAATCGTGTGCGTCACGGGCGCTGGAGGGTTCATTGCTTCTTGGCTTGTGAAGCTTCTTCTTGAGAAGGGCTACACTGTTAGAGGAACGGTTAGACATGCTGATGATCAAAAGAACGCTCATTTGAAAGACTTGGAAGGAGCTCATGAGAGGCTGTCTTTGTTTAGTGCTGATCTTCTTGATTTTGATAGCCTCAAAGCTGCCATTGTGGGCTGTCATGGTGTTTTCACACACGCGTCTCCGGTCACCGACGATCCCGAAAAAGTGGAGGAAGCCATAATCGGGACAAAGAACGTCGTGGCCGCTGCTGCCGAAGCAAAAGTCCGACGAGTGGTGTTCACGTCATCGATCGGAACCGTCTACATGAATCCTAACCGGAGCCCGGACACAGTGAATTGGTATTGCTATGCAAAGACAATAGCAGAGCAAACAGCATGGGAAGTAGCAAAAGAAAGAAATGTTGATTTGGTAGTGGTAAATCCAATGTTGGTGTTGGGGCCATTGTTGCAAGCAGGTGTGAATGCAAGTGTGGTTCATATAATGAAGTATCTGACAGGATCTGCTAAGACATATGTGAATGCTGTACAAGGTTACGTTGATGTTAAGGATGTCGCAAAAGCTCATCTTTTGGTTTATGAAACTCCTTCAGCCTCGGGTAGATATATCTGTGTCGAAAGCATGCTTCACCGCGGAGATTTGGTCGATATTCTTTCCGGATTCTTTCCCGAATACCCTCTTCCCACCAAGTGTTCTGATGAAGTGAATCCAAAGAAGAAGCCTTACAAATACACAATTGAGAAACTAAAGTCATTGGGAATGGAGTTCACTCCAATCAAACAATGCATTTATGAAACTGTGAAGAGCTTGCAAGAAAAGGGCCATCTTCCTCTTCCTTCCCAACTAAAACATTGA 942 45.12 MPIDSLEVSDQIVCVTGAGGFIASWLVKLLLEKGYTVRGTVRHADDQKNAHLKDLEGAHERLSLFSADLLDFDSLKAAIVGCHGVFTHASPVTDDPEKVEEAIIGTKNVVAAAAEAKVRRVVFTSSIGTVYMNPNRSPDTVNWYCYAKTIAEQTAWEVAKERNVDLVVVNPMLVLGPLLQAGVNASVVHIMKYLTGSAKTYVNAVQGYVDVKDVAKAHLLVYETPSASGRYICVESMLHRGDLVDILSGFFPEYPLPTKCSDEVNPKKKPYKYTIEKLKSLGMEFTPIKQCIYETVKSLQEKGHLPLPSQLKH 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27325060 27326501 - Sed0023043.1 Sed05g1402 714028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1402 313 CDD FR_SDR_e 13 282 - -
Sed05g1402 313 Pfam NAD dependent epimerase/dehydratase family 13 228 IPR001509 -
Sed05g1402 313 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 8 300 IPR036291 -
Sed05g1402 313 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 12 298 IPR050425 GO:0016616(PANTHER)
Sed05g1402 313 FunFam Cinnamoyl-CoA reductase 1 7 312 - -
Sed05g1402 313 Gene3D - 4 313 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1400 Sed-Chr5:27311615 Sed05g1402 Sed-Chr5:27325060 1.90E-174 dispersed
Sed05g1402 Sed-Chr5:27325060 Sed06g2055 Sed-Chr6:44628048 3.30E-155 dispersed
Sed05g1401 Sed-Chr5:27318336 Sed05g1402 Sed-Chr5:27325060 7.60E-165 tandem
Sed05g1402 Sed-Chr5:27325060 Sed05g1403 Sed-Chr5:27331511 2.80E-170 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1402 K09753 - csv:116401668 536.184