Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1403 ATGCCGATCGATTCCTCTGCCGTTTCGGGCCAAGTCGTGTGCGTCACCGGCGCCGGCGGCTTCATTGCTTCTTGGCTTGTGAAGCTTCTTCTTGAGAAGGGCTACACTGTTAGAGGAACGGTTAGAAATGCTGATGATCAAAAGAACGCTCATTTGAAAGACTTGGAAGGAGCTCATGAGAGGCTGTCTTTGTTTAGTGCTGATCTTCTTGATTTTGATAGCCTCAAAGCTGCCATTGTGGGCTGTCATGGTGTTTTCCACACCGCGTCTCCGGTCACCGACGATCCCGAAAAAGTGGAGGAAGCCATAATCGGGACAAAGAACGTCGTGGCCGCTGCTGCCGAAGCAAAAGTCCGACGAGTGGTGTTCACGTCATCGATCGGAACCGTCTACATGAATCCTAACCGGAGGCCGGACACAGTGGTGGACGAGTCTTGTTGGAGTGACCTTGAGTTTTGCAAGAACACCAAGAATTGGTATTGCTATGCAAAGACAATAGCAGAGCAAACAGCATGGGAAGTAGCAAAAGAAAGAAATGTTGATTTGGTAGTGGTAAATCCAATGTTGGTGTTGGGGCCATTGTTGCAAGCAGGTGTGAATGCAAGTGTGGTTCATATAATGAAGTATCTGACAGGATCTGCTAAGACATATGTGAATGCTGTACAAGGTTACGTTGATGTTAAGGATGTCGCAAAAGCTCATCTTTTGGTTTATGAAACTCCTTCAGCCTCGGGTAGATATATCTGTGTCGAAAGCATGCTTCACCGCGGAGATTTGGTCGATATTCTTTCCGGATTCTTTCCCGAATACCCTCTTCCCACCAAGTGTTCTGATGAAGTGAATCCAAAGAAGAAGCCTTACAAATACACAATTGAGAAACTAAAGTCATTGGGAATGGAGTTCACTCCAATCAAACAATGCATTTATGAAACTGTGAAGAGCTTGCAAGAAAAGGGCCATCTTCCTCTTCCTTCCCAACTAAAACATTGA 990 45.96 MPIDSSAVSGQVVCVTGAGGFIASWLVKLLLEKGYTVRGTVRNADDQKNAHLKDLEGAHERLSLFSADLLDFDSLKAAIVGCHGVFHTASPVTDDPEKVEEAIIGTKNVVAAAAEAKVRRVVFTSSIGTVYMNPNRRPDTVVDESCWSDLEFCKNTKNWYCYAKTIAEQTAWEVAKERNVDLVVVNPMLVLGPLLQAGVNASVVHIMKYLTGSAKTYVNAVQGYVDVKDVAKAHLLVYETPSASGRYICVESMLHRGDLVDILSGFFPEYPLPTKCSDEVNPKKKPYKYTIEKLKSLGMEFTPIKQCIYETVKSLQEKGHLPLPSQLKH 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27331511 27333284 - Sed0003774.1 Sed05g1403 714029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1403 329 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 12 314 IPR050425 GO:0016616(PANTHER)
Sed05g1403 329 Pfam NAD dependent epimerase/dehydratase family 13 244 IPR001509 -
Sed05g1403 329 CDD FR_SDR_e 13 298 - -
Sed05g1403 329 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 316 IPR036291 -
Sed05g1403 329 Gene3D - 4 329 - -
Sed05g1403 329 FunFam Cinnamoyl-CoA reductase 1 4 329 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1401 Sed-Chr5:27318336 Sed05g1403 Sed-Chr5:27331511 5.70E-160 dispersed
Sed05g1403 Sed-Chr5:27331511 Sed06g2055 Sed-Chr6:44628048 1.10E-172 dispersed
Sed05g1402 Sed-Chr5:27325060 Sed05g1403 Sed-Chr5:27331511 2.80E-170 tandem
Sed05g1403 Sed-Chr5:27331511 Sed05g1404 Sed-Chr5:27350373 4.10E-156 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1403 K09753 - csv:116401668 596.66