Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1404 ATGCCCCTCGCTGCCGCCGCCATAGCTTCCGGAAAAACTGTTTGTGTCACCGGCGCCGGTGGGTTCATTGCCTCTTGGCTTGTCAAGCTTCTTCTCCAAAAGGGTTACAACGTTAGAGGCACTGTCAGAAATCCAGATGATCGGAAGAATGCTCATTTGAAAGAGCTAGATGGAGCTAAAGAAAGGCTGGTGTTGTATGGTGCTGATCTTTTTGATTTTGAGAGCCTCAAAGTCGCCATTATCGGTTGTGACGGTGTTTTTCACACGGCGTCCCCGGTAACCGATGATCCTGAAAAGGTGGAGCAGGCAATAATCGGGACGAAGAACGTCATAATGGCAGCGGCGGAGGTGAAAGTCCGGCGGGTTGTCTTCACATCATCGATCGGAACTGTATACATGAACCCTAATCGGAGCCTTGACATGGTGGTAGATGAGTCTTGTTGGAGTGACCTTGACTTTTGTAAAAACAGTAAGAACTGGTATTGTTATGGAAAGACAGTGGCAGAAGAAACAGCATGGGCAATGGCAAAGGAGAAAGGGTTGGATTTAGTGGTGATAAATCCAATGTTGGTGCTTGGACCCTTATTGCAAGACACAATAAATGCAAGTGTAGATCATATAATGAAGTATTTGACAGGATCTGCAAAGACATTTGTGAATGCGGTACAAGGTTATGTTCATGTTAAGGATGTCGCAAAAGCTCATCTTTTGGTTTATGAAACTCCTTCGGCTTCTGGTAGATATATTTGTGCCGAAACAATGCTTCATCGTGGCGAATTGGTTGAGATTTTGGCTAAGTTCTTTCCCGAGTATCCCATCCCTACCAAGTGCTCTGATCAAGTCAACCCTTGGAAAAAACCTTACAAATATAGTGTAAAAAAGCTCAAAGACTTGGGCATGGAGTTCATACCTGTGAAGCAATGCATTTATGAAACTGTGAAGAGTCTTCAAGAGAAGGGTCATCTTCCACTTCCAACCCAACCCAACAATTTACAATTTCAAAATCCACCCAAAGCTTAA 1020 44.22 MPLAAAAIASGKTVCVTGAGGFIASWLVKLLLQKGYNVRGTVRNPDDRKNAHLKELDGAKERLVLYGADLFDFESLKVAIIGCDGVFHTASPVTDDPEKVEQAIIGTKNVIMAAAEVKVRRVVFTSSIGTVYMNPNRSLDMVVDESCWSDLDFCKNSKNWYCYGKTVAEETAWAMAKEKGLDLVVINPMLVLGPLLQDTINASVDHIMKYLTGSAKTFVNAVQGYVHVKDVAKAHLLVYETPSASGRYICAETMLHRGELVEILAKFFPEYPIPTKCSDQVNPWKKPYKYSVKKLKDLGMEFIPVKQCIYETVKSLQEKGHLPLPTQPNNLQFQNPPKA 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27350373 27354544 - Sed0013633.1 Sed05g1404 714030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1404 339 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 13 315 IPR050425 GO:0016616(PANTHER)
Sed05g1404 339 CDD FR_SDR_e 14 299 - -
Sed05g1404 339 Gene3D - 5 335 - -
Sed05g1404 339 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 10 317 IPR036291 -
Sed05g1404 339 FunFam Cinnamoyl-CoA reductase 1 5 335 - -
Sed05g1404 339 Pfam NAD dependent epimerase/dehydratase family 14 245 IPR001509 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1404 Sed-Chr5:27350373 Sed06g2055 Sed-Chr6:44628048 2.30E-157 dispersed
Sed05g1403 Sed-Chr5:27331511 Sed05g1404 Sed-Chr5:27350373 4.10E-156 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1404 K09753 - csv:101219069 588.956