Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed05g1406 | ATGGACACCGAAGAAGCTCCATCGACACCGGTGACGCCAGGGACACCCGGAGCTCCACTTTTTGGAGGACCCAAGAGAAATCACCATGGAAGTGACAATGGTAGAAGCTCTCTTTTCAAAAGCTGCATCTCCTTCAATGTTGATGATTGGAGCAATGAAGGAGGCTTGTCTAAAATATCTTGTTCTTTCCCACCCTCCCCAATCCCACTTGCAAGAAAGGTGGGAGCAGAGTTCGTTGGCACTCTGATGCTCATTTTTGCCGGAACTGCCACCGCCATCGTGAATCAAAAGACACAAGGAACCGAGACACTCGTTGGCCTAGCGGCCTCCACAGGCATTGCAGTGATGGTCGTCATCATGTCCATCGGGCACATCTCGGGAGCCCATCTAAACCCGGCGATCACCATTGCTTTCGCTGCACTAAAGCATTTTCCATGGAAGCAGGCGCCAGTGTATATTGGAGCTCAAATAGTGGCTTCTCTATGTGCTTCATTTGCATTGAAATGGATATTTGATCCCATAATGGATGAAGGAGTGACTGTTCCTTCATGTGGATATGCTCAAGCTTTTGCTCTTGAGTTTATCATTAGCTTCAACCTCATGTTTGTCATCACAGCAGTTGCTACTGATACTCGAGCTGTGGGAGAGTTGGCGGGAATCGCGGTGGGAGCAACCGTCATGCTCAATGTATTCATTGCCGGGGAAACAACTGGAGCTTCAATGAATCCAGTGAGAACACTGGGGCCAGCCATTGCGACAAACAATTTTAGAGCCATATGGATTTACCTCACAGCTCCCATACTAGGGACATTGTGTGGAGCTGGAATCTACACTGCAGTTAAGTTGCCCAACGAAGATGGCGATACGCACTTGCCTTCTACTGCACGAAGCTTCCGAAGATGA | 903 | 48.84 | MDTEEAPSTPVTPGTPGAPLFGGPKRNHHGSDNGRSSLFKSCISFNVDDWSNEGGLSKISCSFPPSPIPLARKVGAEFVGTLMLIFAGTATAIVNQKTQGTETLVGLAASTGIAVMVVIMSIGHISGAHLNPAITIAFAALKHFPWKQAPVYIGAQIVASLCASFALKWIFDPIMDEGVTVPSCGYAQAFALEFIISFNLMFVITAVATDTRAVGELAGIAVGATVMLNVFIAGETTGASMNPVRTLGPAIATNNFRAIWIYLTAPILGTLCGAGIYTAVKLPNEDGDTHLPSTARSFRR | 300 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 27399014 | 27403126 | + | Sed0027101.1 | Sed05g1406 | 714032 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed05g1406 | 300 | FunFam | Aquaporin NIP2-1 | 60 | 291 | - | - | |
Sed05g1406 | 300 | PANTHER | AQUAPORIN NIP2-1 | 65 | 284 | IPR034294 | - | |
Sed05g1406 | 300 | MobiDBLite | consensus disorder prediction | 1 | 33 | - | - | |
Sed05g1406 | 300 | Gene3D | Glycerol uptake facilitator protein. | 65 | 289 | IPR023271 | - | |
Sed05g1406 | 300 | Pfam | Major intrinsic protein | 70 | 277 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed05g1406 | 300 | ProSitePatterns | MIP family signature. | 129 | 137 | IPR022357 | - | |
Sed05g1406 | 300 | PRINTS | Major intrinsic protein family signature | 111 | 135 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed05g1406 | 300 | PRINTS | Major intrinsic protein family signature | 223 | 245 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed05g1406 | 300 | PRINTS | Major intrinsic protein family signature | 148 | 167 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed05g1406 | 300 | PRINTS | Major intrinsic protein family signature | 192 | 210 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed05g1406 | 300 | PRINTS | Major intrinsic protein family signature | 260 | 280 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed05g1406 | 300 | PRINTS | Major intrinsic protein family signature | 72 | 91 | IPR000425 | GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed05g1406 | 300 | SUPERFAMILY | Aquaporin-like | 69 | 286 | IPR023271 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed05g1406 | Sed-Chr5:27399014 | Sed10g0202 | Sed-Chr10:1175963 | 6.00E-61 | dispersed | |
Sed05g1406 | Sed-Chr5:27399014 | Sed05g0625 | Sed-Chr5:4519609 | 4.40E-88 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed05g1406 | K09874 | - | csv:101207376 | 509.22 |