Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1406 ATGGACACCGAAGAAGCTCCATCGACACCGGTGACGCCAGGGACACCCGGAGCTCCACTTTTTGGAGGACCCAAGAGAAATCACCATGGAAGTGACAATGGTAGAAGCTCTCTTTTCAAAAGCTGCATCTCCTTCAATGTTGATGATTGGAGCAATGAAGGAGGCTTGTCTAAAATATCTTGTTCTTTCCCACCCTCCCCAATCCCACTTGCAAGAAAGGTGGGAGCAGAGTTCGTTGGCACTCTGATGCTCATTTTTGCCGGAACTGCCACCGCCATCGTGAATCAAAAGACACAAGGAACCGAGACACTCGTTGGCCTAGCGGCCTCCACAGGCATTGCAGTGATGGTCGTCATCATGTCCATCGGGCACATCTCGGGAGCCCATCTAAACCCGGCGATCACCATTGCTTTCGCTGCACTAAAGCATTTTCCATGGAAGCAGGCGCCAGTGTATATTGGAGCTCAAATAGTGGCTTCTCTATGTGCTTCATTTGCATTGAAATGGATATTTGATCCCATAATGGATGAAGGAGTGACTGTTCCTTCATGTGGATATGCTCAAGCTTTTGCTCTTGAGTTTATCATTAGCTTCAACCTCATGTTTGTCATCACAGCAGTTGCTACTGATACTCGAGCTGTGGGAGAGTTGGCGGGAATCGCGGTGGGAGCAACCGTCATGCTCAATGTATTCATTGCCGGGGAAACAACTGGAGCTTCAATGAATCCAGTGAGAACACTGGGGCCAGCCATTGCGACAAACAATTTTAGAGCCATATGGATTTACCTCACAGCTCCCATACTAGGGACATTGTGTGGAGCTGGAATCTACACTGCAGTTAAGTTGCCCAACGAAGATGGCGATACGCACTTGCCTTCTACTGCACGAAGCTTCCGAAGATGA 903 48.84 MDTEEAPSTPVTPGTPGAPLFGGPKRNHHGSDNGRSSLFKSCISFNVDDWSNEGGLSKISCSFPPSPIPLARKVGAEFVGTLMLIFAGTATAIVNQKTQGTETLVGLAASTGIAVMVVIMSIGHISGAHLNPAITIAFAALKHFPWKQAPVYIGAQIVASLCASFALKWIFDPIMDEGVTVPSCGYAQAFALEFIISFNLMFVITAVATDTRAVGELAGIAVGATVMLNVFIAGETTGASMNPVRTLGPAIATNNFRAIWIYLTAPILGTLCGAGIYTAVKLPNEDGDTHLPSTARSFRR 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27399014 27403126 + Sed0027101.1 Sed05g1406 714032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1406 300 FunFam Aquaporin NIP2-1 60 291 - -
Sed05g1406 300 PANTHER AQUAPORIN NIP2-1 65 284 IPR034294 -
Sed05g1406 300 MobiDBLite consensus disorder prediction 1 33 - -
Sed05g1406 300 Gene3D Glycerol uptake facilitator protein. 65 289 IPR023271 -
Sed05g1406 300 Pfam Major intrinsic protein 70 277 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed05g1406 300 ProSitePatterns MIP family signature. 129 137 IPR022357 -
Sed05g1406 300 PRINTS Major intrinsic protein family signature 111 135 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed05g1406 300 PRINTS Major intrinsic protein family signature 223 245 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed05g1406 300 PRINTS Major intrinsic protein family signature 148 167 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed05g1406 300 PRINTS Major intrinsic protein family signature 192 210 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed05g1406 300 PRINTS Major intrinsic protein family signature 260 280 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed05g1406 300 PRINTS Major intrinsic protein family signature 72 91 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed05g1406 300 SUPERFAMILY Aquaporin-like 69 286 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g1406 Sed-Chr5:27399014 Sed10g0202 Sed-Chr10:1175963 6.00E-61 dispersed
Sed05g1406 Sed-Chr5:27399014 Sed05g0625 Sed-Chr5:4519609 4.40E-88 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1406 K09874 - csv:101207376 509.22