Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed05g1412 | ATGGCAAGTTTGGAGGAGATCAAGAATGAGAACGTTGATCTTGAGCGCATACCAATTGATGAAGTGTTTGAACAATTAAAATGCTCCCGAGATGGTTTGTCCTCAGAGGATGGGCGCCAAAGGCTCCAACTCTTTGGCCCAAACAAGCTCGAAGAGAAAAAGGAAAATAAATTCCTCACGTTTCTGGGCTTTATGTGGAATCCGCTCTCATGGGTGATGGAAGCTGCAGCTATCATGGCCATTGTTCTTGCCAATGGAGGGGGCCAACCACCGGATTGGCAGGATTTTGTGGGTATTACTGCATTGCTTATTATCAATTCCACAATCAGCTTTATAGAGGAAAACAATGCTGGCAATGCGGCAGCTGCACTTATGGCCGGACTTGCACCAAAAACGAAGGTTCTTCGTGATGGAAGATGGTCTGAGGAAGAGGCCGCAATCTTAGTTCCAGGAGATGTTATTAGCATTAAGTTGGGAGATATTGTTCCAGCTGATGCTCGTTTGTTGGAAGGTGATCCGCTCAAGATTGATCAGTCAGCACTTACCGGTGAGTCTTTGCCAGTTACTAGGAGTGCGGGGGATGAAGTGTTTTCCGGTTCCACCGTCAAGCAAGGTGAGATCGAGGCTGTTGTAATTGCTACTGGTGTCCACACCTTCTTTGGAAAGGCTGCTCATTTGGTTGATAGCACAAATCAAGTGGGACACTTCCAAAAGGTTTTGACTGCCATTGGAAACTTCTGTATTTGCTCGATTGCCGTGGGGATGGTGATAGAGATAGTAGTGATGTATCCGATTCAACGTCGTCGATATAGAGATGGGATTAACAATCTCTTGGTGCTTCTCATCGGAGGGATTCCAATTGCCATGCCAACAGTGTTGTCGGTCACAATGGCGATTGGTTCTCATAGGCTATCCGAGCAGGGTGCCATTACAAAGAGAATGACGGCCATTGAAGAGATGGCTGGAATGGATGTACTTTGCAGTGATAAGACAGGAACTCTAACTCTCAACAAGCTGACAGTTGACAAATCCATGATTGAGGTGTTCGTTAGAGATGTCGACAAAGATACTTTGATTGTGCTCGGAGCTAGAGCTTCTAGGGTTGAGAATCAAGACGCTATTGATGCTTGCATTGTTGGCATGCTAGGTGATCCTAAGGAGGCCAGAGAAGGCATTAAAGAGGTCCATTTCTTGCCCTTCAACCCAGTAGAGAAGCGTACAGCCATTACATATATTGACAACAATGGCAATTGGCATAGAGTCAGCAAAGGGGCGCCCGAGCAGATTATCGAGCTCTGTAACCTTCAAGGTGATGCCAAGAAGAAGGCTCATTCAATCATTGACAAATTTGCCGACCGTGGTCTTCGTTCTCTTGCTATTGGCAGACAGACCGTCCCAGAAAAAACCAAAGAAAGTGCTGGATCACGATGGGAATTTGTCGGTCTCTTGCCTCTCTTTGATCCTCCAAGGCATGATAGTGCAGAGACTATCCGAAGGGCACTTCATCTTGGTGTGAATGTTAAGATGATCACTGGCGACCAACTGGCCATTGGAAAGGAAACTGGCCGAAGGCTTGGAATGGGCACAAACATGTATCCTTCTTCCTCACTCCTTGGAGAAAGTAAGGACGGGTCAATTTCTTCTTTGCCCATTGATGAGCTTATTGAGAAGGCCGACGGATTTGCAGGCGTCTTCCCCGAGCACAAATATGAAATTGTGAAGAGACTTCAAGACAGGAAGCATATTTGTGGGATGACAGGAGATGGTGTGAATGATGCTCCAGCATTGAAGAAAGCAGACATAGGAATTGCAGTTGCTGATGCAACTGATGCTGCCAGAGGTGCTTCCGATATAGTCTTGACGGAGCCAGGACTGAGTGTGATCATCAGTGCTGTTTTAACAAGCAGAGCCATTTTCCAGAGAATGAAAAATTACACCATCTATGCGGTTTCGATCACCATTCGTATTGTCTTGGGCTTTATGCTTATCGCACTCATTTGGCAATTTGACTTCTCTCCTTTCATGGTTCTGATCATAGCCATTCTTAATGATGGCACCATCATGACCATTTCTAAAGACAGAGTCAAACCCTCCCCTCTTCCTGATTCATGGAAGCTCCGCGAGATCTTTGCAACTGGTGTTGTTTTGGGCTCGTACTTGGCCGTTATGACTGTCGTTTTCTTCTGGATTGTTAACACTACCGATTTCTTTACGGAAAAATTTGGTGTACATTCAATCAGAGGAAATGGAGGTGAGCTCACAGCAGCTGTGTATCTTCAAGTCAGCACAGTCAGTCAAGCACTCATCTTTGTCACGAGATCTCGAAGCTGGTCATTTGTCGAACGCCCTGGTCTACTCCTCTTGTTTGCCTTCTTCATTGCACAGCTGATTGCTACTCTCATTGCTGTGTATGCGAACTGGCCCTTTGCGGATATGAAAGGGATTGGATGGGGATGGGCCGGAGTTATCTGGATCTATAGCATTATCTTCTACATTCCTCTGGACATTCTCAAATTCATCACCCGATTCGCATTGAGTGGCAAGGCTTGGGACAACATGCTCGAAAACAAGACTGCATTCACGTCAAAGAAGGATTATGGCATTGGCGAGAGGGAGGCTCAATGGGCTGCAGCTCAACGAACCCTTCACGGCTTGCAGCCTCCCGAAACTTCTGAGATCTTCAATGACAAAGCCAATTACAGGGAGTTGTCTGAAATCGCCGAGCAAGCCAAGAAGCGTGCTGAGGTTGCAAGGTTAAGGGAGCTTCATACATTAAAGGGACATGTTGAATCAGTGGTGAAACTAAAGGGGTTGGACATTGAAACAATTCAACAGCACTACACAGTTTGA | 2850 | 46.14 | MASLEEIKNENVDLERIPIDEVFEQLKCSRDGLSSEDGRQRLQLFGPNKLEEKKENKFLTFLGFMWNPLSWVMEAAAIMAIVLANGGGQPPDWQDFVGITALLIINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGRWSEEEAAILVPGDVISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTRSAGDEVFSGSTVKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGMVIEIVVMYPIQRRRYRDGINNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSEQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKSMIEVFVRDVDKDTLIVLGARASRVENQDAIDACIVGMLGDPKEAREGIKEVHFLPFNPVEKRTAITYIDNNGNWHRVSKGAPEQIIELCNLQGDAKKKAHSIIDKFADRGLRSLAIGRQTVPEKTKESAGSRWEFVGLLPLFDPPRHDSAETIRRALHLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGESKDGSISSLPIDELIEKADGFAGVFPEHKYEIVKRLQDRKHICGMTGDGVNDAPALKKADIGIAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLIALIWQFDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLREIFATGVVLGSYLAVMTVVFFWIVNTTDFFTEKFGVHSIRGNGGELTAAVYLQVSTVSQALIFVTRSRSWSFVERPGLLLLFAFFIAQLIATLIAVYANWPFADMKGIGWGWAGVIWIYSIIFYIPLDILKFITRFALSGKAWDNMLENKTAFTSKKDYGIGEREAQWAAAQRTLHGLQPPETSEIFNDKANYRELSEIAEQAKKRAEVARLRELHTLKGHVESVVKLKGLDIETIQQHYTV | 949 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 27526095 | 27531370 | + | Sed0007095.1 | Sed05g1412 | 714038 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed05g1412 | 949 | NCBIfam | plasma-membrane proton-efflux P-type ATPase | 32 | 804 | IPR006534 | GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro) | |
| Sed05g1412 | 949 | Pfam | Cation transporter/ATPase, N-terminus | 16 | 79 | IPR004014 | - | |
| Sed05g1412 | 949 | PRINTS | P-type cation-transporting ATPase superfamily signature | 481 | 492 | - | - | |
| Sed05g1412 | 949 | PRINTS | P-type cation-transporting ATPase superfamily signature | 327 | 341 | - | - | |
| Sed05g1412 | 949 | PRINTS | P-type cation-transporting ATPase superfamily signature | 503 | 513 | - | - | |
| Sed05g1412 | 949 | PRINTS | P-type cation-transporting ATPase superfamily signature | 609 | 621 | - | - | |
| Sed05g1412 | 949 | PRINTS | P-type cation-transporting ATPase superfamily signature | 586 | 605 | - | - | |
| Sed05g1412 | 949 | PRINTS | P-type cation-transporting ATPase superfamily signature | 177 | 191 | - | - | |
| Sed05g1412 | 949 | CDD | P-type_ATPase_H | 32 | 839 | IPR006534 | GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro) | |
| Sed05g1412 | 949 | SUPERFAMILY | HAD-like | 323 | 633 | IPR036412 | - | |
| Sed05g1412 | 949 | PRINTS | H+-transporting ATPase (proton pump) signature | 443 | 461 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed05g1412 | 949 | PRINTS | H+-transporting ATPase (proton pump) signature | 586 | 602 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed05g1412 | 949 | PRINTS | H+-transporting ATPase (proton pump) signature | 558 | 574 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed05g1412 | 949 | PRINTS | H+-transporting ATPase (proton pump) signature | 617 | 642 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed05g1412 | 949 | PRINTS | H+-transporting ATPase (proton pump) signature | 758 | 779 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed05g1412 | 949 | FunFam | ATPase 4 plasma membrane-type | 571 | 813 | - | - | |
| Sed05g1412 | 949 | FunFam | Plasma membrane ATPase | 130 | 214 | - | - | |
| Sed05g1412 | 949 | Pfam | haloacid dehalogenase-like hydrolase | 323 | 600 | - | - | |
| Sed05g1412 | 949 | NCBIfam | HAD-IC family P-type ATPase | 99 | 346 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed05g1412 | 949 | NCBIfam | HAD-IC family P-type ATPase | 561 | 675 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed05g1412 | 949 | Pfam | E1-E2 ATPase | 129 | 306 | - | - | |
| Sed05g1412 | 949 | SFLD | p-type atpase | 309 | 637 | IPR044492 | - | |
| Sed05g1412 | 949 | SMART | Cation_ATPase_N_a_2 | 13 | 85 | IPR004014 | - | |
| Sed05g1412 | 949 | FunFam | Plasma membrane ATPase | 479 | 634 | - | - | |
| Sed05g1412 | 949 | SUPERFAMILY | Calcium ATPase, transduction domain A | 130 | 227 | IPR008250 | - | |
| Sed05g1412 | 949 | Gene3D | - | 324 | 623 | IPR023214 | - | |
| Sed05g1412 | 949 | Gene3D | - | 92 | 813 | - | - | |
| Sed05g1412 | 949 | Gene3D | - | 898 | 949 | - | - | |
| Sed05g1412 | 949 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 15 | 872 | - | GO:0005886(PANTHER)|GO:0008553(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0051453(PANTHER)|GO:1902600(PANTHER) | |
| Sed05g1412 | 949 | SFLD | Haloacid Dehalogenase | 309 | 637 | - | - | |
| Sed05g1412 | 949 | FunFam | Plasma membrane ATPase | 339 | 486 | - | - | |
| Sed05g1412 | 949 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 12 | 845 | IPR023298 | - | |
| Sed05g1412 | 949 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 329 | 335 | IPR018303 | - | |
| Sed05g1412 | 949 | Gene3D | - | 130 | 214 | - | - | |
| Sed05g1412 | 949 | Gene3D | - | 339 | 486 | IPR023299 | GO:0000166(InterPro) | |
| Sed05g1412 | 949 | Coils | Coil | 900 | 920 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed03g2821 | Sed-Chr3:45094028 | Sed05g1412 | Sed-Chr5:27526095 | 0.00E+00 | dispersed | |
| Sed05g1412 | Sed-Chr5:27526095 | Sed11g0557 | Sed-Chr11:5847127 | 0.00E+00 | dispersed | |
| Sed05g1412 | Sed-Chr5:27526095 | Sed05g1413 | Sed-Chr5:27526908 | 0.00E+00 | tandem | |
| Sed12g2309 | Sed-Chr12:33241248 | Sed05g1412 | Sed-Chr5:27526095 | 0.00E+00 | wgd | |
| Sed05g1412 | Sed-Chr5:27526095 | Sed06g2070 | Sed-Chr6:44709744 | 0.00E+00 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed05g1412 | K01535 | - | csv:101212751 | 1710.27 |