Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed05g1413 | ATGTGGAATCCGCTCTCATGGGTGATGGAAGCTGCAGCTATCATGGCCATTGTTCTTGCCAATGGAGGGGGCCAACCACCGGATTGGCAGGATTTTGTGGGTATTACTGCATTGCTTATTATCAATTCCACAATCAGCTTTATAGAGGAAAACAATGCTGGCAATGCGGCAGCTGCACTTATGGCCGGACTTGCACCAAAAACGAAGGTTCTTCGTGATGGAAGATGGTCTGAGGAAGAGGCCGCAATCTTAGTTCCAGGAGATGTTATTAGCATTAAGTTGGGAGATATTGTTCCAGCTGATGCTCGTTTGTTGGAAGGTGATCCGCTCAAGATTGATCAGTCAGCACTTACCGGTGAGTCTTTGCCAGTTACTAGGAGTGCGGGGGATGAAGTGTTTTCCGGTTCCACCGTCAAGCAAGGTGAGATCGAGGCTGTTGTAATTGCTACTGGTGTCCACACCTTCTTTGGAAAGGCTGCTCATTTGGTTGATAGCACAAATCAAGTGGGACACTTCCAAAAGGTTTTGACTGCCATTGGAAACTTCTGTATTTGCTCGATTGCCGTGGGGATGGTGATAGAGATAGTAGTGATGTATCCGATTCAACGTCGTCGATATAGAGATGGGATTAACAATCTCTTGGTGCTTCTCATCGGAGGGATTCCAATTGCCATGCCAACAGTGTTGTCGGTCACAATGGCGATTGGTTCTCATAGGCTATCCGAGCAGGGTGCCATTACAAAGAGAATGACGGCCATTGAAGAGATGGCTGGAATGGATGTACTTTGCAGTGATAAGACAGGAACTCTAACTCTCAACAAGCTGACAGTTGACAAATCCATGATTGAGGTGTTCGTTAGAGATGTCGACAAAGATACTTTGATTGTGCTCGGAGCTAGAGCTTCTAGGGTTGAGAATCAAGACGCTATTGATGCTTGCATTGTTGGCATGCTAGGTGATCCTAAGGAGGCCAGAGAAGGCATTAAAGAGGTCCATTTCTTGCCCTTCAACCCAGTAGAGAAGCGTACAGCCATTACATATATTGACAACAATGGCAATTGGCATAGAGTCAGCAAAGGGGCGCCCGAGCAGATTATCGAGCTCTGTAACCTTCAAGGTGATGCCAAGAAGAAGGCTCATTCAATCATTGACAAATTTGCCGACCGTGGTCTTCGTTCTCTTGCTATTGGCAGACAGACCGTCCCAGAAAAAACCAAAGAAAGTGCTGGATCACGATGGGAATTTGTCGGTCTCTTGCCTCTCTTTGATCCTCCAAGGCATGATAGTGCAGAGACTATCCGAAGGGCACTTCATCTTGGTGTGAATGTTAAGATGATCACTGGCGACCAACTGGCCATTGGAAAGGAAACTGGCCGAAGGCTTGGAATGGGCACAAACATGTATCCTTCTTCCTCACTCCTTGGAGAAAGTAAGGACGGGTCAATTTCTTCTTTGCCCATTGATGAGCTTATTGAGAAGGCCGACGGATTTGCAGGCGTCTTCCCCGAGCACAAATATGAAATTGTGAAGAGACTTCAAGACAGGAAGCATATTTGTGGGATGACAGGAGATGGTGTGAATGATGCTCCAGCATTGAAGAAAGCAGACATAGGAATTGCAGTTGCTGATGCAACTGATGCTGCCAGAGGTGCTTCCGATATAGTCTTGACGGAGCCAGGACTGAGTGTGATCATCAGTGCTGTTTTAACAAGCAGAGCCATTTTCCAGAGAATGAAAAATTACACCATCTATGCGGTTTCGATCACCATTCGTATTGTCTTGGGCTTTATGCTTATCGCACTCATTTGGCAATTTGACTTCTCTCCTTTCATGGTTCTGATCATAGCCATTCTTAATGATGGCACCATCATGACCATTTCTAAAGACAGAGTCAAACCCTCCCCTCTTCCTGATTCATGGAAGCTCCGCGAGATCTTTGCAACTGGTGTTGTTTTGGGCTCGTACTTGGCCGTTATGACTGTCGTTTTCTTCTGGATTGTTAACACTACCGATTTCTTTACGGAAAAATTTGGTGTACATTCAATCAGAGGAAATGGAGGTGAGCTCACAGCAGCTGTGTATCTTCAAGTCAGCACAGTCAGTCAAGCACTCATCTTTGTCACGAGATCTCGAAGCTGGTCATTTGTCGAACGCCCTGGTCTACTCCTCTTGTTTGCCTTCTTCATTGCACAGCTGATTGCTACTCTCATTGCTGTGTATGCGAACTGGCCCTTTGCGGATATGAAAGGGATTGGATGGGGATGGGCCGGAGTTATCTGGATCTATAGCATTATCTTCTACATTCCTCTGGACATTCTCAAATTCATCACCCGATTCGCATTGAGTGGCAAGGCTTGGGACAACATGCTCGAAAACAAGACTGCATTCACGTCAAAGAAGGATTATGGCATTGGCGAGAGGGAGGCTCAATGGGCTGCAGCTCAACGAACCCTTCACGGCTTGCAGCCTCCCGAAACTTCTGAGATCTTCAATGACAAAGCCAATTACAGGGAGTTGTCTGAAATCGCCGAGCAAGCCAAGAAGCGTGCTGAGGTTGCAAGGTTAAGGGAGCTTCATACATTAAAGGGACATGTTGAATCAGTGGTGAAACTAAAGGGGTTGGACATTGAAACAATTCAACAGCACTACACAGTTTGA | 2658 | 46.31 | MWNPLSWVMEAAAIMAIVLANGGGQPPDWQDFVGITALLIINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGRWSEEEAAILVPGDVISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTRSAGDEVFSGSTVKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGMVIEIVVMYPIQRRRYRDGINNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSEQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKSMIEVFVRDVDKDTLIVLGARASRVENQDAIDACIVGMLGDPKEAREGIKEVHFLPFNPVEKRTAITYIDNNGNWHRVSKGAPEQIIELCNLQGDAKKKAHSIIDKFADRGLRSLAIGRQTVPEKTKESAGSRWEFVGLLPLFDPPRHDSAETIRRALHLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGESKDGSISSLPIDELIEKADGFAGVFPEHKYEIVKRLQDRKHICGMTGDGVNDAPALKKADIGIAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLIALIWQFDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLREIFATGVVLGSYLAVMTVVFFWIVNTTDFFTEKFGVHSIRGNGGELTAAVYLQVSTVSQALIFVTRSRSWSFVERPGLLLLFAFFIAQLIATLIAVYANWPFADMKGIGWGWAGVIWIYSIIFYIPLDILKFITRFALSGKAWDNMLENKTAFTSKKDYGIGEREAQWAAAQRTLHGLQPPETSEIFNDKANYRELSEIAEQAKKRAEVARLRELHTLKGHVESVVKLKGLDIETIQQHYTV | 885 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 27526908 | 27531370 | + | Sed0007095.2 | Sed05g1413 | 714039 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed05g1413 | 885 | SUPERFAMILY | Calcium ATPase, transduction domain A | 66 | 163 | IPR008250 | - | |
| Sed05g1413 | 885 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 1 | 781 | IPR023298 | - | |
| Sed05g1413 | 885 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 265 | 271 | IPR018303 | - | |
| Sed05g1413 | 885 | PRINTS | H+-transporting ATPase (proton pump) signature | 694 | 715 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed05g1413 | 885 | PRINTS | H+-transporting ATPase (proton pump) signature | 494 | 510 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed05g1413 | 885 | PRINTS | H+-transporting ATPase (proton pump) signature | 553 | 578 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed05g1413 | 885 | PRINTS | H+-transporting ATPase (proton pump) signature | 379 | 397 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed05g1413 | 885 | PRINTS | H+-transporting ATPase (proton pump) signature | 522 | 538 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed05g1413 | 885 | FunFam | Plasma membrane ATPase | 415 | 570 | - | - | |
| Sed05g1413 | 885 | CDD | P-type_ATPase_H | 1 | 775 | IPR006534 | GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro) | |
| Sed05g1413 | 885 | Gene3D | - | 260 | 559 | IPR023214 | - | |
| Sed05g1413 | 885 | FunFam | Plasma membrane ATPase | 275 | 422 | - | - | |
| Sed05g1413 | 885 | Pfam | haloacid dehalogenase-like hydrolase | 259 | 536 | - | - | |
| Sed05g1413 | 885 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 1 | 808 | - | GO:0005886(PANTHER)|GO:0008553(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0051453(PANTHER)|GO:1902600(PANTHER) | |
| Sed05g1413 | 885 | FunFam | ATPase 4 plasma membrane-type | 507 | 749 | - | - | |
| Sed05g1413 | 885 | FunFam | Plasma membrane ATPase | 66 | 150 | - | - | |
| Sed05g1413 | 885 | NCBIfam | plasma-membrane proton-efflux P-type ATPase | 1 | 740 | IPR006534 | GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro) | |
| Sed05g1413 | 885 | Gene3D | - | 275 | 422 | IPR023299 | GO:0000166(InterPro) | |
| Sed05g1413 | 885 | Pfam | E1-E2 ATPase | 65 | 242 | - | - | |
| Sed05g1413 | 885 | Gene3D | - | 28 | 749 | - | - | |
| Sed05g1413 | 885 | Coils | Coil | 836 | 856 | - | - | |
| Sed05g1413 | 885 | SUPERFAMILY | HAD-like | 259 | 569 | IPR036412 | - | |
| Sed05g1413 | 885 | SFLD | p-type atpase | 245 | 573 | IPR044492 | - | |
| Sed05g1413 | 885 | SFLD | Haloacid Dehalogenase | 245 | 573 | - | - | |
| Sed05g1413 | 885 | NCBIfam | HAD-IC family P-type ATPase | 497 | 611 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed05g1413 | 885 | NCBIfam | HAD-IC family P-type ATPase | 35 | 282 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Sed05g1413 | 885 | Gene3D | - | 834 | 885 | - | - | |
| Sed05g1413 | 885 | Gene3D | - | 66 | 150 | - | - | |
| Sed05g1413 | 885 | PRINTS | P-type cation-transporting ATPase superfamily signature | 113 | 127 | - | - | |
| Sed05g1413 | 885 | PRINTS | P-type cation-transporting ATPase superfamily signature | 545 | 557 | - | - | |
| Sed05g1413 | 885 | PRINTS | P-type cation-transporting ATPase superfamily signature | 417 | 428 | - | - | |
| Sed05g1413 | 885 | PRINTS | P-type cation-transporting ATPase superfamily signature | 439 | 449 | - | - | |
| Sed05g1413 | 885 | PRINTS | P-type cation-transporting ATPase superfamily signature | 263 | 277 | - | - | |
| Sed05g1413 | 885 | PRINTS | P-type cation-transporting ATPase superfamily signature | 522 | 541 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed05g1413 | Sed-Chr5:27526908 | Sed06g2070 | Sed-Chr6:44709744 | 0.00E+00 | dispersed | |
| Sed05g1412 | Sed-Chr5:27526095 | Sed05g1413 | Sed-Chr5:27526908 | 0.00E+00 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed05g1413 | K01535 | - | csv:101212751 | 1614.36 |