Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1417 ATGCCGAGGCTGGTTTTGAAAGGGGGAAGTAGGCCGCCATGGGTGGGTTTAGCTGCTGCTGTTTGGGTTCAAATTGCTGCTGGTTCTTCCTATAACTTTTCCCTTTACTCTCACACGCTTAAATCTGTTCTGGGTTTGAACCAGCAGCAGCTTACAGTGCTGGGAGTGGCTAATGATATTGGGGAAAGTGTTGGGTTGCTTCCTGGACTTGCTTGCAATAGATTTCCCCCTTGGGCTGTGCTTTTGGTGGGTTCTGTTTGTTGCTTTGTGGGTTATGGAGCTATTTGGCTTGCTGTTAGTAAAACTCTTCCTAATCTGCCTTATTGGTTGCTATGGATCACACATTGTATTGCTACAAATAGCAATGCGTGGTTCGGAACAGCTGTACTCGTAACCAACATGAGGAACTTCCCTCTCAGCAGGGGTACTGTTGCCGGCATTCTTAAAGGTTATGTCGGGCTTAGTGCTGCCGTATACACGGTGATATACAGCATGGTGCTCAGAAAGTCTGCTCTGGATTTACTGTTGTTTCTTACGATCGGGATACCCATTTTGTGCATAGCCTTGATGTACTTTGTTCGACCTTGTACTCCAGCTTCTTCCGAGGATCCATCTGAGCATGGCCATTTTCTTTTCACCCAAGCTGCTTGTGTTTTGCTAGCTGTTTTTCTTGTCTCGACCACGATTCTAGATGCAACGACAACCCCTAGTGATGCAGTCGCATACACCTTGGTTGCCATAATGGTTATCCTTTTAATGTCTCCTCTCATGGTTCCAATAAAAATGACCCTTTGTTCTGCAAAATCGAAAAAACTTGGCCCTCGAGTTGACTCTGCAGACCCTTTGGTGTCCGGAGAAAGCGATTCTTCTCAAATAGAACCTTTATTGACACCATCTTCCTCAGCTACAAATCTTGGAAGTTTCTATGAGAATGATGATGCATCAGATAACGAAACACTTCTGGCCGTGGGAGAGGGAGCGATTCATAAGAAGAAGAGAAGACCGAAAAGAGGGGAAGATTTCAAGCTCCGTGAAGCCATAGTCAAAGCTGATTTTTGGCTACTTTGGTTCTTGTACTTCCTTGGGGTCGGTCCAGGAATTACAGTTCTTAACAATTTGTCTCAAATTGGGATTTCATTAGGTGTTAATGACACAACATTGCTGTTGGCTCTTTTCAGCTTCTGCAACTTTATCGGTCGTCTAGGCTCCGGTGTCGTTTCCGAACACTTCGTCAGGTCGAGAATGATACCCCGCTCGCTCTGGATGATGTTTGCACTAATACTCATGTCTATAGGATTCCTTCTGTATGCATCTGCCCTCACGAGTACTCTTTACGTCGCCACTGGTTTCACTGGAATCAGCTATGGTATTCTATATTCTATGATGGTTCCTCTCGCATCCGAGATTTTCGGCCTACAGAATTTTGGCGTAATCTTCAACTTCATGCAGCTGGGGAATCCTATAGGAGCAGTCATTTTCTCAGTTATGCTCGCCAGTACTTTTTACGACAATGAAGCTGCTAAGCAAGGTTCGATAACCTGCATAGGCCAACAGTGCTTCAGGATCACTTTCTTCATTCTTTCAGGCGTGGCCGGGTTAGGTTCGGTCTTAAGCATAATTTTGACCATTAGATTACGACCAGTCTATCAAATGCTTTACGCTGGTGGCTCGTTTCGCTTGCCTCAAAGTTCAGGTCATTGA 1701 45.21 MPRLVLKGGSRPPWVGLAAAVWVQIAAGSSYNFSLYSHTLKSVLGLNQQQLTVLGVANDIGESVGLLPGLACNRFPPWAVLLVGSVCCFVGYGAIWLAVSKTLPNLPYWLLWITHCIATNSNAWFGTAVLVTNMRNFPLSRGTVAGILKGYVGLSAAVYTVIYSMVLRKSALDLLLFLTIGIPILCIALMYFVRPCTPASSEDPSEHGHFLFTQAACVLLAVFLVSTTILDATTTPSDAVAYTLVAIMVILLMSPLMVPIKMTLCSAKSKKLGPRVDSADPLVSGESDSSQIEPLLTPSSSATNLGSFYENDDASDNETLLAVGEGAIHKKKRRPKRGEDFKLREAIVKADFWLLWFLYFLGVGPGITVLNNLSQIGISLGVNDTTLLLALFSFCNFIGRLGSGVVSEHFVRSRMIPRSLWMMFALILMSIGFLLYASALTSTLYVATGFTGISYGILYSMMVPLASEIFGLQNFGVIFNFMQLGNPIGAVIFSVMLASTFYDNEAAKQGSITCIGQQCFRITFFILSGVAGLGSVLSIILTIRLRPVYQMLYAGGSFRLPQSSGH 566
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 27577275 27580960 + Sed0023798.1 Sed05g1417 714043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1417 566 Gene3D MFS general substrate transporter like domains 347 549 IPR036259 -
Sed05g1417 566 Gene3D MFS general substrate transporter like domains 14 205 IPR036259 -
Sed05g1417 566 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 13 549 - GO:0016020(PANTHER)
Sed05g1417 566 CDD MFS_Mch1p_like 12 534 - -
Sed05g1417 566 Pfam Nodulin-like 13 260 IPR010658 -
Sed05g1417 566 MobiDBLite consensus disorder prediction 283 299 - -
Sed05g1417 566 SUPERFAMILY MFS general substrate transporter 11 199 IPR036259 -
Sed05g1417 566 SUPERFAMILY MFS general substrate transporter 333 547 IPR036259 -
Sed05g1417 566 MobiDBLite consensus disorder prediction 272 299 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0723 Sed-Chr3:4360226 Sed05g1417 Sed-Chr5:27577275 1.90E-95 dispersed
Sed05g1417 Sed-Chr5:27577275 Sed11g2265 Sed-Chr11:35903390 3.50E-94 dispersed
Sed01g0204 Sed-Chr1:1615772 Sed05g1417 Sed-Chr5:27577275 1.00E-90 transposed
Sed05g1417 Sed-Chr5:27577275 Sed06g2078 Sed-Chr6:44746004 1.90E-294 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1417 - - - 0.0