Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed05g1449 ATGGCCTTTATTCTACTTCATGGTACGCTTCATGTCACAATTTATGAGGTGGATAAGCTTCATTCGGGAGGTCGCAATTTCTTAACATCGTTAGTAGAAAACGTAGAGGAAGCAGTGGGATTTGGCAGAGGAATAACAAGGCTATATGCAACAATAGACTTAGAAAAAGCCAGAGTAGGAAGAACAAGAAGACTCGAAAGAGAACATTCAAATCCAAAATGGTACGAAACTTTCCACATCTACTGTGCTCACATGGCTTCCAACATAATCTTCACAGTCAAAGACGACAACCCGATCGGCGCAACCTTAATCGGCCGAGCCTATTTGCCAGTTAAAGACATCATAACTGGTCAAGAAGTTGACACATGGGTACCCATTTTAGACACCCGCAAAAACCCCATCAAAGGAGGCCCCAAAATCCATGTCAAATTGCAGTATTTTGATGTCACAAAGGATCAAAATTGGGGTCGTGGGATTAAAAGTCCTAAGTTTCCTGGGGTACCCTACACTTATTTCTCTCAAAGACAGGGCTGTAAGGTTACTTTATACCAAGATGCTCATGTTCCTGATGGATTTATCCCCAAAATCCCTCTTGCTGGGGGTAAGTTTTATGAACCAAATAGATGTTGGGAGGATGTTTTTGATGCTATTACTAATGCTAAACATTTGATTTATATTACTGGTTGGTCTGTTTATACTGAGATTTCTTTGGTGAGGGATAGACGGAGGGCGAAACCGGGCGGAGACGTGAAGCTCGGGGAATTGCTTAAGAAAAAAGCGAGTGAGGGAGTTAGAGTTCTTTTGCTTGTTTGGAATGATACTACTTCTGTGCCTATATTGAAGCAGGATGGATTAATGGCTACTCATGATGAAGATACTGCTCAGTTCTTTGCTAATTCTGATGTGCATTGTGTTTTGTGTCCTCGTAATCCTGATGATGGGGCTAATGTTATTCAGGACATTGCTGTTGGGACTATGTTTACTCATCATCAAAAGACTGTTGTTGTGGATACTGATTTGCCTAGTGGAGATCCAAATAGGAGGAGGATTGTTAGCTTTGTTGGTGGGATTGATCTTTGTGATGGGAGATATGATAGTCCATTTCATTCCCTTTTTAGAACTTTGGATTCTGTTCACCATGATGATTTCCATCAACCCAACTTTCCGGGTACTTCCGTGAACAAAGGCGGTCCGAGAGAGCCGTGGCACGATATCCATTCCAAGCTCGAAGGACCCGTCGCGTGGGATGTTTTGCACAACTTTGAACAGAGATGGAGGAAGCAAGGTGGGAGGGATTTTCTTCTGAAATTAAGAGAATTGGATGAAATCTTCATCACTCCATCACCTGTCATGTTCCCTGATGACCCTGATAGTTGGAATGCTCAAGTTTTCAGGTCAATCGACGGGGGGGCGGCGTTTGGCTTCCCCGACAAGCCTGAAGAAGCAGCGAAATCAGGGCTTATAAGCGGAAAGGATAACACGATTGATCGAAGTATTCAAGATGCTTACATCAATGCAATTAGAAGAGCAAAGAATTTCATATACATTGAAAACCAGTACTTCCTTGGAAGCTCCTTTGAGTGGAGTGATACTGACGTGAAGCCTGAGATGATCAATGCCCTGCATCTTATCCCAAAGGAACTTTCGCTTAAAATTGTGAGTAAAATCGAAGCTCGAGAGCGGTTTACCGTGTACGTTGTTGTCCCGATGTGGCCGGAAGGGTTTCCAGAGGGGGGAACGGTTCAAGCAATATTGGATTGGCAAAGAAGAACAATGGATTTGATGTATAAAGATATAACTATAGCTCTTAAAGCTAATGGCATTGAAGTGGAACCAAGAAATTATTTGACATTCTTCTGTGTAGGTAATCGTGAAGTTAAAAAGCCTGGAGAATATGAGCCATCTGAATCACCTGAAGAAAATTCTGCTTATCTTAGAGCACAAAAAGCTAGGCGCTTCATGATTTATGTTCATGCCAAGATGATGATTGTGGATGATGAGTACATAATAGTGGGATCAGCCAACATAAACCAAAGATCAATGGATGGAGCAAGGGATTCAGAGATAGCCATGGGAGCTTACCAGCCATTTCATTTATCAACCAGAGAGCCAGCCAGAGGCCAAGTTCATGGCTTTCGTTTGGCATTATGGTTTGAACATTTAGGATTGCTTCATGAATCCTTCCTATTTCCAGAAAGTATTGAATGTGTCAAAAAGGTAAATCAACTTGCTGATAAATATTGGGACCTTTACTCAAGTGATACCTTTGACCATGACCTTCCGGGACACTTGCTTCGCTACCCGATCGGCATCTCCGGTGATGGTGAAATTACCCAGCTTCCGGGCTTCGAGTTCTTCCCCGATACCAAGGCGCGAGTTCTCGGTACCAAGTCTAATTATATCCCTCCTATCCTCACTACTTGA 2424 42.74 MAFILLHGTLHVTIYEVDKLHSGGRNFLTSLVENVEEAVGFGRGITRLYATIDLEKARVGRTRRLEREHSNPKWYETFHIYCAHMASNIIFTVKDDNPIGATLIGRAYLPVKDIITGQEVDTWVPILDTRKNPIKGGPKIHVKLQYFDVTKDQNWGRGIKSPKFPGVPYTYFSQRQGCKVTLYQDAHVPDGFIPKIPLAGGKFYEPNRCWEDVFDAITNAKHLIYITGWSVYTEISLVRDRRRAKPGGDVKLGELLKKKASEGVRVLLLVWNDTTSVPILKQDGLMATHDEDTAQFFANSDVHCVLCPRNPDDGANVIQDIAVGTMFTHHQKTVVVDTDLPSGDPNRRRIVSFVGGIDLCDGRYDSPFHSLFRTLDSVHHDDFHQPNFPGTSVNKGGPREPWHDIHSKLEGPVAWDVLHNFEQRWRKQGGRDFLLKLRELDEIFITPSPVMFPDDPDSWNAQVFRSIDGGAAFGFPDKPEEAAKSGLISGKDNTIDRSIQDAYINAIRRAKNFIYIENQYFLGSSFEWSDTDVKPEMINALHLIPKELSLKIVSKIEARERFTVYVVVPMWPEGFPEGGTVQAILDWQRRTMDLMYKDITIALKANGIEVEPRNYLTFFCVGNREVKKPGEYEPSESPEENSAYLRAQKARRFMIYVHAKMMIVDDEYIIVGSANINQRSMDGARDSEIAMGAYQPFHLSTREPARGQVHGFRLALWFEHLGLLHESFLFPESIECVKKVNQLADKYWDLYSSDTFDHDLPGHLLRYPIGISGDGEITQLPGFEFFPDTKARVLGTKSNYIPPILTT 807
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 28237338 28243757 - Sed0027391.1 Sed05g1449 714075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed05g1449 807 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 325 363 IPR001736 GO:0003824(InterPro)
Sed05g1449 807 Gene3D Endonuclease Chain A 200 438 - -
Sed05g1449 807 SMART pld_4 653 680 IPR001736 GO:0003824(InterPro)
Sed05g1449 807 SMART pld_4 325 363 IPR001736 GO:0003824(InterPro)
Sed05g1449 807 PANTHER PHOSPHOLIPASE D 6 794 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
Sed05g1449 807 Pfam C2 domain 9 125 IPR000008 -
Sed05g1449 807 FunFam Phospholipase D 466 699 - -
Sed05g1449 807 Gene3D C2 domain 5 156 IPR035892 -
Sed05g1449 807 SMART C2_3c 9 123 IPR000008 -
Sed05g1449 807 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 149 IPR035892 -
Sed05g1449 807 Pfam Phospholipase D Active site motif 326 363 IPR001736 GO:0003824(InterPro)
Sed05g1449 807 Pfam Phospholipase D Active site motif 655 680 IPR001736 GO:0003824(InterPro)
Sed05g1449 807 PIRSF PLD_plant 1 807 IPR011402 GO:0004630(InterPro)|GO:0005509(InterPro)|GO:0016020(InterPro)|GO:0046470(InterPro)
Sed05g1449 807 ProSiteProfiles C2 domain profile. 1 124 IPR000008 -
Sed05g1449 807 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 653 680 IPR001736 GO:0003824(InterPro)
Sed05g1449 807 SUPERFAMILY Phospholipase D/nuclease 497 737 - -
Sed05g1449 807 FunFam Phospholipase D delta 200 443 - -
Sed05g1449 807 Gene3D Endonuclease Chain A 473 696 - -
Sed05g1449 807 Pfam Phospholipase D C terminal 726 797 IPR024632 -
Sed05g1449 807 CDD C2_plant_PLD 2 147 - -
Sed05g1449 807 SUPERFAMILY Phospholipase D/nuclease 150 435 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1374 Sed-Chr1:10215310 Sed05g1449 Sed-Chr5:28237338 0.00E+00 dispersed
Sed05g1449 Sed-Chr5:28237338 Sed09g0096 Sed-Chr9:718036 3.80E-203 dispersed
Sed05g1449 Sed-Chr5:28237338 Sed07g0780 Sed-Chr7:5807850 0.00E+00 wgd
Sed05g1449 Sed-Chr5:28237338 Sed09g1494 Sed-Chr9:38679941 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed05g1449 K01115 - csv:101215246 1521.91