Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed05g1449 | ATGGCCTTTATTCTACTTCATGGTACGCTTCATGTCACAATTTATGAGGTGGATAAGCTTCATTCGGGAGGTCGCAATTTCTTAACATCGTTAGTAGAAAACGTAGAGGAAGCAGTGGGATTTGGCAGAGGAATAACAAGGCTATATGCAACAATAGACTTAGAAAAAGCCAGAGTAGGAAGAACAAGAAGACTCGAAAGAGAACATTCAAATCCAAAATGGTACGAAACTTTCCACATCTACTGTGCTCACATGGCTTCCAACATAATCTTCACAGTCAAAGACGACAACCCGATCGGCGCAACCTTAATCGGCCGAGCCTATTTGCCAGTTAAAGACATCATAACTGGTCAAGAAGTTGACACATGGGTACCCATTTTAGACACCCGCAAAAACCCCATCAAAGGAGGCCCCAAAATCCATGTCAAATTGCAGTATTTTGATGTCACAAAGGATCAAAATTGGGGTCGTGGGATTAAAAGTCCTAAGTTTCCTGGGGTACCCTACACTTATTTCTCTCAAAGACAGGGCTGTAAGGTTACTTTATACCAAGATGCTCATGTTCCTGATGGATTTATCCCCAAAATCCCTCTTGCTGGGGGTAAGTTTTATGAACCAAATAGATGTTGGGAGGATGTTTTTGATGCTATTACTAATGCTAAACATTTGATTTATATTACTGGTTGGTCTGTTTATACTGAGATTTCTTTGGTGAGGGATAGACGGAGGGCGAAACCGGGCGGAGACGTGAAGCTCGGGGAATTGCTTAAGAAAAAAGCGAGTGAGGGAGTTAGAGTTCTTTTGCTTGTTTGGAATGATACTACTTCTGTGCCTATATTGAAGCAGGATGGATTAATGGCTACTCATGATGAAGATACTGCTCAGTTCTTTGCTAATTCTGATGTGCATTGTGTTTTGTGTCCTCGTAATCCTGATGATGGGGCTAATGTTATTCAGGACATTGCTGTTGGGACTATGTTTACTCATCATCAAAAGACTGTTGTTGTGGATACTGATTTGCCTAGTGGAGATCCAAATAGGAGGAGGATTGTTAGCTTTGTTGGTGGGATTGATCTTTGTGATGGGAGATATGATAGTCCATTTCATTCCCTTTTTAGAACTTTGGATTCTGTTCACCATGATGATTTCCATCAACCCAACTTTCCGGGTACTTCCGTGAACAAAGGCGGTCCGAGAGAGCCGTGGCACGATATCCATTCCAAGCTCGAAGGACCCGTCGCGTGGGATGTTTTGCACAACTTTGAACAGAGATGGAGGAAGCAAGGTGGGAGGGATTTTCTTCTGAAATTAAGAGAATTGGATGAAATCTTCATCACTCCATCACCTGTCATGTTCCCTGATGACCCTGATAGTTGGAATGCTCAAGTTTTCAGGTCAATCGACGGGGGGGCGGCGTTTGGCTTCCCCGACAAGCCTGAAGAAGCAGCGAAATCAGGGCTTATAAGCGGAAAGGATAACACGATTGATCGAAGTATTCAAGATGCTTACATCAATGCAATTAGAAGAGCAAAGAATTTCATATACATTGAAAACCAGTACTTCCTTGGAAGCTCCTTTGAGTGGAGTGATACTGACGTGAAGCCTGAGATGATCAATGCCCTGCATCTTATCCCAAAGGAACTTTCGCTTAAAATTGTGAGTAAAATCGAAGCTCGAGAGCGGTTTACCGTGTACGTTGTTGTCCCGATGTGGCCGGAAGGGTTTCCAGAGGGGGGAACGGTTCAAGCAATATTGGATTGGCAAAGAAGAACAATGGATTTGATGTATAAAGATATAACTATAGCTCTTAAAGCTAATGGCATTGAAGTGGAACCAAGAAATTATTTGACATTCTTCTGTGTAGGTAATCGTGAAGTTAAAAAGCCTGGAGAATATGAGCCATCTGAATCACCTGAAGAAAATTCTGCTTATCTTAGAGCACAAAAAGCTAGGCGCTTCATGATTTATGTTCATGCCAAGATGATGATTGTGGATGATGAGTACATAATAGTGGGATCAGCCAACATAAACCAAAGATCAATGGATGGAGCAAGGGATTCAGAGATAGCCATGGGAGCTTACCAGCCATTTCATTTATCAACCAGAGAGCCAGCCAGAGGCCAAGTTCATGGCTTTCGTTTGGCATTATGGTTTGAACATTTAGGATTGCTTCATGAATCCTTCCTATTTCCAGAAAGTATTGAATGTGTCAAAAAGGTAAATCAACTTGCTGATAAATATTGGGACCTTTACTCAAGTGATACCTTTGACCATGACCTTCCGGGACACTTGCTTCGCTACCCGATCGGCATCTCCGGTGATGGTGAAATTACCCAGCTTCCGGGCTTCGAGTTCTTCCCCGATACCAAGGCGCGAGTTCTCGGTACCAAGTCTAATTATATCCCTCCTATCCTCACTACTTGA | 2424 | 42.74 | MAFILLHGTLHVTIYEVDKLHSGGRNFLTSLVENVEEAVGFGRGITRLYATIDLEKARVGRTRRLEREHSNPKWYETFHIYCAHMASNIIFTVKDDNPIGATLIGRAYLPVKDIITGQEVDTWVPILDTRKNPIKGGPKIHVKLQYFDVTKDQNWGRGIKSPKFPGVPYTYFSQRQGCKVTLYQDAHVPDGFIPKIPLAGGKFYEPNRCWEDVFDAITNAKHLIYITGWSVYTEISLVRDRRRAKPGGDVKLGELLKKKASEGVRVLLLVWNDTTSVPILKQDGLMATHDEDTAQFFANSDVHCVLCPRNPDDGANVIQDIAVGTMFTHHQKTVVVDTDLPSGDPNRRRIVSFVGGIDLCDGRYDSPFHSLFRTLDSVHHDDFHQPNFPGTSVNKGGPREPWHDIHSKLEGPVAWDVLHNFEQRWRKQGGRDFLLKLRELDEIFITPSPVMFPDDPDSWNAQVFRSIDGGAAFGFPDKPEEAAKSGLISGKDNTIDRSIQDAYINAIRRAKNFIYIENQYFLGSSFEWSDTDVKPEMINALHLIPKELSLKIVSKIEARERFTVYVVVPMWPEGFPEGGTVQAILDWQRRTMDLMYKDITIALKANGIEVEPRNYLTFFCVGNREVKKPGEYEPSESPEENSAYLRAQKARRFMIYVHAKMMIVDDEYIIVGSANINQRSMDGARDSEIAMGAYQPFHLSTREPARGQVHGFRLALWFEHLGLLHESFLFPESIECVKKVNQLADKYWDLYSSDTFDHDLPGHLLRYPIGISGDGEITQLPGFEFFPDTKARVLGTKSNYIPPILTT | 807 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 28237338 | 28243757 | - | Sed0027391.1 | Sed05g1449 | 714075 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed05g1449 | 807 | ProSiteProfiles | Phospholipase D phosphodiesterase active site profile. | 325 | 363 | IPR001736 | GO:0003824(InterPro) | |
Sed05g1449 | 807 | Gene3D | Endonuclease Chain A | 200 | 438 | - | - | |
Sed05g1449 | 807 | SMART | pld_4 | 653 | 680 | IPR001736 | GO:0003824(InterPro) | |
Sed05g1449 | 807 | SMART | pld_4 | 325 | 363 | IPR001736 | GO:0003824(InterPro) | |
Sed05g1449 | 807 | PANTHER | PHOSPHOLIPASE D | 6 | 794 | IPR015679 | GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER) | |
Sed05g1449 | 807 | Pfam | C2 domain | 9 | 125 | IPR000008 | - | |
Sed05g1449 | 807 | FunFam | Phospholipase D | 466 | 699 | - | - | |
Sed05g1449 | 807 | Gene3D | C2 domain | 5 | 156 | IPR035892 | - | |
Sed05g1449 | 807 | SMART | C2_3c | 9 | 123 | IPR000008 | - | |
Sed05g1449 | 807 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 6 | 149 | IPR035892 | - | |
Sed05g1449 | 807 | Pfam | Phospholipase D Active site motif | 326 | 363 | IPR001736 | GO:0003824(InterPro) | |
Sed05g1449 | 807 | Pfam | Phospholipase D Active site motif | 655 | 680 | IPR001736 | GO:0003824(InterPro) | |
Sed05g1449 | 807 | PIRSF | PLD_plant | 1 | 807 | IPR011402 | GO:0004630(InterPro)|GO:0005509(InterPro)|GO:0016020(InterPro)|GO:0046470(InterPro) | |
Sed05g1449 | 807 | ProSiteProfiles | C2 domain profile. | 1 | 124 | IPR000008 | - | |
Sed05g1449 | 807 | ProSiteProfiles | Phospholipase D phosphodiesterase active site profile. | 653 | 680 | IPR001736 | GO:0003824(InterPro) | |
Sed05g1449 | 807 | SUPERFAMILY | Phospholipase D/nuclease | 497 | 737 | - | - | |
Sed05g1449 | 807 | FunFam | Phospholipase D delta | 200 | 443 | - | - | |
Sed05g1449 | 807 | Gene3D | Endonuclease Chain A | 473 | 696 | - | - | |
Sed05g1449 | 807 | Pfam | Phospholipase D C terminal | 726 | 797 | IPR024632 | - | |
Sed05g1449 | 807 | CDD | C2_plant_PLD | 2 | 147 | - | - | |
Sed05g1449 | 807 | SUPERFAMILY | Phospholipase D/nuclease | 150 | 435 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g1374 | Sed-Chr1:10215310 | Sed05g1449 | Sed-Chr5:28237338 | 0.00E+00 | dispersed | |
Sed05g1449 | Sed-Chr5:28237338 | Sed09g0096 | Sed-Chr9:718036 | 3.80E-203 | dispersed | |
Sed05g1449 | Sed-Chr5:28237338 | Sed07g0780 | Sed-Chr7:5807850 | 0.00E+00 | wgd | |
Sed05g1449 | Sed-Chr5:28237338 | Sed09g1494 | Sed-Chr9:38679941 | 0.00E+00 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed05g1449 | K01115 | - | csv:101215246 | 1521.91 |